Gene PHATRDRAFT_27518 details

Gene Information

• Locus tag: PHATRDRAFT_27518
• Symbol: COPbeta2
• ID: 7201516
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011677
• Strand: +
• Start bp: 8873
• End bp: 12404
• Gene Length: 3532 bp
• Protein Length: 962 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002180359
• Protein GI: 219119187

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGTTGGCACT GTAGACCTTC GATCTCACCA TGGTGCGTCT TTAATTGTCA TTGAGTATTA 
ATGACAAACC TGAAAAGAAT TTTTAGAACT CGCATGCCCC GACGAGTTGC GTTCAGGGTT 
GAGGCAAGCG TTTCGTCATT CCTCTGCCAC TCCTCGCGAG ATCTTCGTGC AGCTAGCGCT 
TGTTTGGGAT GCGGGACGAT GTTCAAAGAG CTAATGCGAA GAATTCTTCC AATGTGCGAG 
TTGAAACTAG AAGATCCTAA ACGCCTGTAA ATGGCAAATC GGGTGTGGGA TCATCCATGG 
CTTTGTCAAA TGTCGCATCG ATGTTGTAGA CGCGTGTGGC GACACGTTAC ACTTTTTACG 
GATAAGCGCT CTCCTAATCG GGACTCTCAA ACTCTTACCT TTTCTCACCT TCTTGAACTG 
TCATCTTACA GCCGCTTCGT TTGGATATCA AAAAGAAGCT TTCCGCCTCT TCGGAACGTG 
TTAAATCGGT TGACTTGCAC AACTCGGAGC CATGGGTGCT CGCTGCGCTC TACAGCGGCA 
ACGTCATGAT TTGGGACTAC GAATCCGGCA GTCTCGCCAA GTCTTTTGAA GTCTCCGAAC 
TCCCCGTGCG CTGCGCGAAA TTCATTGAAC GTAAACAATG GTTTCTGGCG GCATCGGATG 
ATATGCGCCT GCGCGTTTTC AACTACAACA CGATGGAAAA AATCAAGGAG TTCGAAGCGC 
ACGCCGATTA CATTCGTTCG CTCGAAGTAC ACCCCTCTCT ACCTTACGTT TTTTCGTCGT 
CGGACGACAT GACGATTAAG CTTTGGGATT GGGATCGTGG CTTCGATTGT ACGCAATTGT 
TCGAAGGACA CGCGCATTAC GTAATGCAAG TCAAGATCAA CCCCAAGGAC ACAAACACCT 
TCGCTTCCGC AAGTCTCGAT CGGTCCATCA AGGTGTGGGG ATTGGGATCT CACGTCCCGC 
ACTACACCTT GGAAGGTCAT GAGCGTGGTG TCAATTGCGT GGACTATTAC CCATCCGGTG 
ATAAGCCTTA CATTCTATCT GGAGCTGATG ATCGTACTGT GAAAATCTGG GACTATCAGG 
TACGTGCACA AAAGTTTAGA TTCGTCCCAC TTGTCAGGCA AAATCTCAAC TTCGCATATT 
ATTCGTAATA GACAAAATCC ATTGTACATT CCCTGGAAGG CCATACACAC AATGTTTGCG 
CTGTCATGTT CCACCCCAAG CTGCCCATCA TCGCTTCCGC TTCCGAAGAC GGTACAGTCC 
GTATTTGGCA GAGCACCACG TACCGTGCGG AAACCACCCT CAACTACGGT ATGGAACGTG 
CGTGGGCACT CGCCGCGTCG CCAGAATCCA ACAAACTGGC AATAGGTTTC GATGAAGGAT 
GTGTGTGTAT CGAATTGGGC TCAGACGATC CGGTTGCTTC GATGGATACA ACCGGAAAGG 
TCGTTTGGGC GACCAACAAC GAAATCAAAA CTGCTTCGAT CCGCGGTGTT GCAGGTAGTG 
GCGAAGATGC CTTGCCCGAT GGCGAACGGC TCCCGGTAGT CCCTCGTGAT CTGGGCGCTT 
GTGAACTATT CCCGCAAATG CTTCGTCACA ACTGCAACGG ACGCTTTGTT GCTGTGTGTG 
GCGATGGCGA ATTTATCATT TATACCGCCC AAGCACTTCG CAACAAGGCT TTTGGGCAAG 
CTCTAGACTT TGTATGGTCT GGATCGGGTA CTGGAGACTA TGCGATTCGT GAAACGATCA 
ATAGTGTGAA AGTTTTCAAA AACTTTAAGG AATCACAGAG TATCGTACCT GCTACTGCCT 
CAGCTGAAGG CTTGTTTGGA GGACAAATGG TCGGAGTAAA AGGCGGCGAC GGTGCTGTGT 
TGTTCTATGA CTGGGATAGC GGCATCTTCG TTCGTAAAAT TGATGTAAAC CCGAAAGAAG 
TGTACTGGTC AGACAGCGGC AACATGGCAC TTTTGGCTTG CGAAGGAACA GCGTACGTTC 
TCTCGCATAA CGCCGAAGTG ATGGCTCAAG CGATTGTATC TGGGCAGGTC TCTCCTGAAG 
AAGGCATCGA TGGTACTTTC GATCTTTTGT TCGAAATAGA TGATACGATC ACGTCCGGAA 
AGTGGGTTGG GGATTGTTTC ATCTACGTCA ACAACGTCGG GCGTCTCAAC TACAGCGTTG 
GTGGGCAGAT TGAAACATTG GTTCATTTAG ATACTTCGGC GGGCGGGTCA GTACAGCACA 
CAATTCTTGG ATATCTGGCC AAGGAAGACC GAATATTCCT GATCGACAAG TCCTTGAACG 
TTGTTTCGTA CAAGGTTACT TTGGCGGTAT TGCAGTATCA AACAGCCGTC ATGCGCGGTG 
ACTTTGATTC GGCTAATGAG CTGTTGCCTT CAATCCCCGA AGAAGAATAT ACCAAAGTCG 
CTCGTTTCTT GGAATCTCAA GGATTCAAGG AAGAGGCGTT GGCTGTGACG CAGGATCCGG 
ATCACAAATT TGACTTGTCG CTCGAGCTAG GCCAAGTCGA TTTGGCGCAC CAGATCCTAT 
TGGAAACGCC CGAAGAGGAC AAGGAATCGA CCGACACACA GGCGAAGTGG AAACGGCTCA 
GCGATGCTGC CCTTAAGGAC ACCAATTTGG AACTGTGCGA ATCTGCCAGC ATTTCAAGCA 
ACGATTACTC TGGACTGCTT CTTTTGTACT CGGCAACTGG AAATCTTTCG GCGATGGAAA 
AGCTGGCGAA GCTCGCATCG GACGGAGGAA AGACAAACGT AGCTTTTGTC GCGTACATGC 
TGACCGGCAA TGTAGAGGCT TGCGCCGATT TATTGATCGC TACCAAAAGG CTGCCAGAAG 
CTGCATTCTT TGTGCGAACA TACTTGCCGT CCCGAATCGA AGAAGTTGTG GCTCTTTGGA 
GAAGAGATCT TTCCTCGATT AGCGAGTCAG CGGCAACTGC TCTTGCTACT CCATCAGAGA 
ATGCCACACT GTTCCCGGAT ATGGATGTTG CTTTGCAAGT CGAGCAAATG TTTCTAGGAC 
AACGAGAGGC GACGAAGGCT ACGGGTATCC CCGCATCGGA GTACCTGAGT GCCAAGGACG 
ACCTGGATTT GAATTTGATT GATCTTATCA AAACCCGTTC GCAGCCGGCA GTAGACCATT 
CTATGGCAGA GACTCATCAA TTGGTGGATG AAGAAAAGGA GGCAGACCCC ACGGACGACC 
ATGATGATGA AGAGGATGCC GATTTAGCTG CTGTACGTGA AGCCGAAGAA CGAGGAGCGA 
GTGAGGCTGC AGCGGTTGCT GAAGTACAGA GGCCGGCGGA AGGAGCGGCA GAATTTGAAG 
ACGATGTACC GTTAGAAATG ACTGAGGATG TTCCTGGAGC GACGAAAGAA GTAGACCGAG 
ACGATAGTGG ATTCGACGAG GAGTGGTAGA TAAGGTGGGC TTTACTATTT CTACCAATAA 
ACGATATGAG AAATGAGACA ATTTGATCAT ACCATGAACT GTGCACTGTA AATCAGCAAG 
TTCTCCCTTA CCCACAGGGT ACCGGTAGAT ATATGGCTAA GAAATCATCT GC 

 

Protein sequence

MPLRLDIKKK LSASSERVKS VDLHNSEPWV LAALYSGNVM IWDYESGSLA KSFEVSELPV 
RCAKFIERKQ WFLAASDDMR LRVFNYNTME KIKEFEAHAD YIRSLEVHPS LPYVFSSSDD 
MTIKLWDWDR GFDCTQLFEG HAHYVMQVKI NPKDTNTFAS ASLDRSIKVW GLGSHVPHYT 
LEGHERGVNC VDYYPSGDKP YILSGADDRT VKIWDYQTKS IVHSLEGHTH NVCAVMFHPK 
LPIIASASED GTVRIWQSTT YRAETTLNYG MERAWALAAS PESNKLAIGF DEGCVCIELG 
SDDPVASMDT TGKVVWATNN EIKTASIRGV AGSGEDALPD GERLPVVPRD LGACELFPQM 
LRHNCNGRFV AVCGDGEFII YTAQALRNKA FGQALDFVWS GSGTGDYAIR ETINSVKVFK 
NFKESQSIVP ATASAEGLFG GQMVGVKGGD GAVLFYDWDS GIFVRKIDVN PKEVYWSDSG 
NMALLACEGT AYVLSHNAEV MAQAIVSGQV SPEEGIDGTF DLLFEIDDTI TSGKWVGDCF 
IYVNNVGRLN YSVGGQIETL VHLDTSAGGS VQHTILGYLA KEDRIFLIDK SLNVVSYKVT 
LAVLQYQTAV MRGDFDSANE LLPSIPEEEY TKVARFLESQ GFKEEALAVT QDPDHKFDLS 
LELGQVDLAH QILLETPEED KESTDTQAKW KRLSDAALKD TNLELCESAS ISSNDYSGLL 
LLYSATGNLS AMEKLAKLAS DGGKTNVAFV AYMLTGNVEA CADLLIATKR LPEAAFFVRT 
YLPSRIEEVV ALWRRDLSSI SESAATALAT PSENATLFPD MDVALQVEQM FLGQREATKA 
TGIPASEYLS AKDDLDLNLI DLIKTRSQPA VDHSMAETHQ LVDEEKEADP TDDHDDEEDA 
DLAAVREAEE RGASEAAAVA EVQRPAEGAA EFEDDVPLEM TEDVPGATKE VDRDDSGFDE 
EW