Gene PHATRDRAFT_20547 details

Gene Information

• Locus tag: PHATRDRAFT_20547
• ID: 7201155
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011677
• Strand: -
• Start bp: 490127
• End bp: 492407
• Gene Length: 2281 bp
• Protein Length: 555 aa
• GC content: 51%
• Product: homeobox protein
• Protein accession: XP_002180649
• Protein GI: 219119793

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GGTGCTGCAG CCCATCACGA AAGATTCGGC GTCTACGACA AAACTCCAAT AGGTCTCGGT 
TTATCCATTC CATCGCGAAC AAGGTTCATC ATGAAGTTCG TTCTGGGATA CTTTGGATTC 
ACGCTGGGCT TTGCCCAGGC CTTCAGCTTA CAAAGTGTGG GAAGATCGTC GTCCAAGACG 
ACGACGCACC TCCGAATGGA TTCGGAAGGC CATGATGAAA AGCCCGTCTT GAATAAGTAC 
AGTCGGTGAG TGTATGCCAT CGCGACATGG GACAATACTC CGTCGGATTG TTCGTAGAAG 
AGGGTAAAGT GAGCGTTGCC GAAGAACAAA GGTGCACTAA ACAACACAGA GTAGCTAGCT 
TACACACGCA CGTGTTCCTA TATTTTCAAT TTGCAGAACC TTGACGCAAA CCAAGGTCCA 
GGGTGCGTCG CAGGCGATGC TGTACGCGAC GGGTATTACG GAGGAAGATC TCGACAAACC 
TCAGGTTGGC ATCTGCTCCG TCTGGTACGA AGGCAATCCT TGCAACATGC ACCTTTTAGA 
TCTTTCCGAA AAGGTCAAAA AAGGAGTCGA AGACGCCTCC TGCGTAGGCT ACCGCTTCAA 
CACGGTGGGT GTTTCCGACG GTATCAGTAT GGGCACCTCC GGTATGCGGT ATTCGTTACA 
GTCGCGCGAT TTGATTGCGG ATTCCATGGA AACGACTATG GGAGGACAAT GGTACGATGG 
ATTGATTGCC TTGCCGGGAT GTGACAAAAA CATGCCGGGC TGTATCATGG CCATGGGACG 
CTTGAACCGA CCGGGTATCA TGGTCTATGG AGGAACTATT CGGGCTGGAA AGCAGCCGTC 
TACTGGAAAC AGTCTCGACA TTGTCAGCGC CTTTCAGTCT TACGGAGAGT ATGTTTACGA 
TAAGATTACG GAGGAGGAGC GCAAGGAAAT TCTGCAGCAC GCATGTCCCG GACAAGGAGC 
CTGTGGAGGA ATGTATACCG CAAATACAAT GGCCACCGCG ATTGAAGCCC TCGGTACGTG 
CTCGGATTTT TTTCTTCCCT TGGATCATGT AGTGATTCTC ACGTGACTTG ATCTACAGGC 
ATGTCCCTTC CGTATTCATC GTCGTCGCCG GCGGATTCCA AGGAAAAGGC TGATGAGTGC 
TATCGTTCGG GGGAAGCCAT GTATCGCCTT TTGGAACTTG ATCTTAAGCC TCGTGATATC 
ATGACCAAGG CGGCTTTCGA GAATGCCATG CGTATGGTCA TGGTCACGGG TGGATCCACC 
AACGCTGTCT TACACTTGAT TGCTATGAGT CGCTCGGTTC AGAATCCAGA AGTAGCAATC 
ACGTTGGAAG ACTTCCAACG AATCTCCAAT CAAACACCAT TCTTGGCTGA CTTAAAACCT 
TCCGGCAAAT ACGTCATGGA AGATGTCCAG AATATTGGCG GAACTCCTGG ATTGATCAAG 
TTCATGATTG ACAATGGTTT GTTTGATGGA AGCCAAATGA CCGTTAGCGG GAAAACACAC 
GCCGAAAACT TGAAGGATCA TCCCGGACTC ACACCCGGAC AGGACATCAT CCGTCCTCTT 
TCTGACCCCG TGAAAAAGAC TGGTCACTTG ATGATGATGT ATGGAAATCT CTGTCCCGGA 
GGTGGTGTCG CCAAGATTAC CGGTAAGGAA GGAGAAACGT TCACTGGAAC TGCGCGTGTG 
TACGACAATG AGCAATTGAT GATGCGTGGT TTGGAAAACA AGGAAATTAA GGCAGGCGAC 
GTGGTCATCA TTAGATATGA AGGGCCAAAG GGTGGCCCGG GCTTACCAGA GATGCTGACA 
CCCACAAGTG CGATCATGGG CGCTGGGCTC GGAGACAAAG TGGCGCTTTT GACCGATGGT 
CGGTTCAGTG GTGGAAGTCA CGGCTTCTGT ATCGGACACA TCACTCCCGA AGCGCAGGTT 
GGTGGACCCA TTGCCCTCGT TAAGAATGGT GACCCCATCC GCATTGATGC TCGTGCTGAA 
CAACGAACCA TTGATCTGTT GATTTCGGAC GAAGAATGGG AGAAGCGAAG AACAGAATGG 
ACGCCGCCAC CTCTCCGAGC GACGCAGGGA ACCCTCTTTA AGTACATCCA GTGCGTTGCG 
ACTGCCAGTG AAGGATGTGT GACTGACGAA GTTGGAACCT CGACAGCTGC TGAGATTGTG 
ATTGCCGCTC CCAAAACTCC CGCGGTTGCG GAATTGGAAG CAAAGATTGC AGCGCTGGAG 
GCCAGGATCG GCCAGGTTAC CAACTGAGCT AATTATCCTG AAATCTCATT TGGTATTGTT 
C 

 

Protein sequence

LTQTKVQGAS QAMLYATGIT EEDLDKPQVG ICSVWYEGNP CNMHLLDLSE KVKKGVEDAS 
CVGYRFNTVG VSDGISMGTS GMRYSLQSRD LIADSMETTM GGQWYDGLIA LPGCDKNMPG 
CIMAMGRLNR PGIMVYGGTI RAGKQPSTGN SLDIVSAFQS YGEYVYDKIT EEERKEILQH 
ACPGQGACGG MYTANTMATA IEALGMSLPY SSSSPADSKE KADECYRSGE AMYRLLELDL 
KPRDIMTKAA FENAMRMVMV TGGSTNAVLH LIAMSRSVQN PEVAITLEDF QRISNQTPFL 
ADLKPSGKYV MEDVQNIGGT PGLIKFMIDN GLFDGSQMTV SGKTHAENLK DHPGLTPGQD 
IIRPLSDPVK KTGHLMMMYG NLCPGGGVAK ITGKEGETFT GTARVYDNEQ LMMRGLENKE 
IKAGDVVIIR YEGPKGGPGL PEMLTPTSAI MGAGLGDKVA LLTDGRFSGG SHGFCIGHIT 
PEAQVGGPIA LVKNGDPIRI DARAEQRTID LLISDEEWEK RRTEWTPPPL RATQGTLFKY 
IQCVATASEG CVTDE