Gene PHATRDRAFT_12583 details

Gene Information

• Locus tag: PHATRDRAFT_12583
• Symbol: SOD1
• ID: 7201207
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011677
• Strand: +
• Start bp: 736922
• End bp: 737572
• Gene Length: 651 bp
• Protein Length: 216 aa
• GC content: 54%
• Product: precursor of mutase superoxide dismutase [Fe/Mn]
• Protein accession: XP_002180497
• Protein GI: 219119474

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GCGTACTCGG TCCCCGACCT CGCGTACCCC TTCGAAGCTC TCGAACCTTA CATTGACACA 
CCCACGATGA AGATCCACCA CGACAAGCAT CACGGAACCT ACGTTGCCAA CATTAACAAG 
GCTACCGAAG GCAAGGACGA GGTGCCCATT CTTGATTTGA TGGAGAACGC TATCGAAGCG 
GGTCCGGCCT ACCGCAACAG TGGCGGTGGG CACTACAATC ATGCCTTTTT CTGGGACGAA 
ATGGCTCCTC CGGATCAAGC CAAGAACACC AAGCCCTCTG CGCAGCTTGT CGACCTCATC 
AATGCCAGTT TCGGAAGCAT GGACGAAATG AAGTCCAAAT TCGAAGCCCT CGCCGCTCCA 
GGAGCCACCT TTGGATCCGG ATGGGTATGG GTTTGCGTTA ACCAGAAGGG GGACGAACTC 
AAGCTCGTCA ACACACCCAA TCAGGACAAT CCGCTCATGA AGGGAGTCGC GGACGAAATC 
ATGTTCCCCA TTCTGGGTTT GGATGTCTGG GAACACGCTT ACTACCTCAA GTACCAAAAC 
CGACGTCCGG AATACGTCTC CAACTTTTGG AATGTCGTCA ACTGGGACAA GGTCAGCGAA 
AACTGTGCCT ACGTGGTCGA GAAGCACGTT GGCGTGAGCG TTCGCGGGTA A 

 

Protein sequence

AYSVPDLAYP FEALEPYIDT PTMKIHHDKH HGTYVANINK ATEGKDEVPI LDLMENAIEA 
GPAYRNSGGG HYNHAFFWDE MAPPDQAKNT KPSAQLVDLI NASFGSMDEM KSKFEALAAP 
GATFGSGWVW VCVNQKGDEL KLVNTPNQDN PLMKGVADEI MFPILGLDVW EHAYYLKYQN 
RRPEYVSNFW NVVNWDKVSE NCAYVVEKHV GVSVRG