Gene PHATRDRAFT_54505 details

Gene Information

• Locus tag: PHATRDRAFT_54505
• ID: 7201038
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011676
• Strand: +
• Start bp: 815477
• End bp: 818897
• Gene Length: 3421 bp
• Protein Length: 1056 aa
• GC content: 46%
• Product: predicted protein
• Protein accession: XP_002180126
• Protein GI: 219118718

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AGACGGAATT TGCTGAGTCG CAGAGGATTC GCCACAAGCA ACAGCGCTTG CTGCTGCTTC 
GTCATGCATC CCGCTGTCAA CATGAAGCGG GGAAATGCCC AGCTACCCCT CACTGCGCTA 
GTATGAAGCG ACTTTGGAGA CATATTGCAA ATTGTAAGGA TCAGGACTGC TCTGTTCAAC 
ATTGTCTTAG TAGTCGCGGC GTTCTCAGCC ATTATCGACG GTGTAAAGAT GCGCTCTGTC 
CTGCATGTGG GCCTGTCCGA GAAACTATAC GGAAAAGTCA TGAGATGGAA AGTCAAAGCA 
ATCCACAAGG GGTACCGTCC GACAATCGGT TTATGGGTCG AGATGATTCG TTCGGTCGGT 
CAAGTTCCGT TACATCGCCA ACCGAACAGG AACCGAAGCG TATGAGAACA GAACATCGCC 
CTAGCGCGGC GTCTATAAAA TCAGCGCGCT CTACGCCTGT GAGCGCGCCT CCTTTGAAGC 
AAGAACCCCC TCGAAGCATA GGCAAAGGTG AGAAAGTAGC TCCATCTGCT GAAAAAGATT 
CGAAAGGAAG TGTCGACCGA TCACTCCTCG AGAGTTTCTC GGTGAAGGAG CTCGAAACTC 
ATTTGCGATC GCTGGAACGA GAGACCCAAC TTCCTCCGGC GAAGCTCAAG TCTAAATGTC 
TGGATGTATT AAAGGGTTTA ATGGCTCACC AACACGGTTG GGTTTTCAAT GGTCCAGTCG 
ATCCAGTTGA GCTCGGTCTT GTTGATTATT TTGAAATTAT CAAGAAGCCC ATGGACCTCG 
GCACCATTCA AAAGCGTTTG GAAAGTAGTG CATACCACTC CATCGATGAC TTTAAAACGG 
ATATCTTCTT AACTTTTGAG AATGCAATGG TGTATAATGA GGATGGTTCC GTTGTCTACG 
ACATGGCGAA GCAGCTGAAG GTTAAAGCCG AATCTGACAT GAAGAGACTT GTGGCACAAC 
TGGAAACAGA AGACCTTGAA AGACGCCAGA ATGAACGCGC GTGCACCTTG TGTGGTTCAG 
AGAAACTGTT GTTTGAACCT CCTGTTTATT TTTGTAACGG AATTAATTGT CAATCGCAGC 
GGATCCGACG AAACAGTCAC TTCTATATCG GAGGAAACAA CCAATACTTT TGGTGTAGCC 
CTTGCTTTAA TGAACTTGAT GATAAAATTC CGATTGAGCT TGCCGACTTG ACAGTCATGA 
AAAACAATCT GAAGAAGAAA AAGAATGACG AGATTCACGA GGAGAGCTGG GTACAGTGTG 
ACACTTGCGA ACGGTGGGTT CACCAGATAT GTGGACTTTT TAACACCCGT CAGAATAAAG 
AGCACCACAG CGAGTACTGT TGTCCTAAAT GTTTGCTTGA AAAACGCAAA ACTGTTTCAA 
TAACTCCAGC GCCGAAGCCA TTGCTGGCTG CGGACTTGCC GCGGACTACT TTATCGGAGT 
GGCTAGAACG CAGTGTCACT AAGAAAGTGG AAAAAAGGAA GAGAGAACTG GCCGAAGAGC 
GTTCGCAGAA TGAGGTACGT GTCTCTACAT TTTGTTCATC GAGCAAGTCG TTTATGTATC 
GATTTAACTA AGGAAGTCTT TTCTCTTTCA GGGGATATCT CTTGAAGAAG CTTTGCGACA 
GGTAGAAAGT GGCGGCCCAA TAATAATTCG TCAAGTTACC GCGATGGATA GAAAGCTTGA 
GGTTCGCGAG CTGATGAAAA AGCGATATGC ACACAAGAAT TATCCTGACG AATTTCCCTT 
TCGGTGCAAA TCGATTGTCG TTTTTCAGCA TCTTGACGGA GTTGATGTCA TTCTGTTTGC 
GTTGTATCTC TACGAACACG GTGAAGACAA TCCTCCGCCC AACCAACGAA CCGTGTACAT 
CTCATATCTG GACAGTGTTC ACTTTATGAG GCCTCGCAAA CTCCGGACCT TTGTGTACCA 
TGAGATTCTG ATTGCCTATT TGGACTACGC TAGGCGACGG GGATTTGCAA CTGCTCATAT 
TTGGGCATGC CCACCTTTGA AGGGTGACGA TTACATTTTC TACGCTAAAC CAGAAGACCA 
GAAGACTCCG AGAGATTCAC GACTGCGCCT TTGGTACATT GACATGCTCG TAGAATGTCA 
AAAAAGGAGT ATCGTCGGCA AAGTAACGAA TATGTACGAT ATTTATTTCG CAGACCCGAA 
TTTGGACGCC ACTGCTGTTC CCTATTTGGA GGGCGACTAT TTTCCTGGTG AAGCGGAGAA 
TATTATAAAA ATGCTCGAAG AAGGTGGAGG CAAGAAACTT GGGTCAGTGG GGAAAAAGAA 
GAAAAGCAAA TCGTCGAAAG CGCAGAAGAA TAAGGGAGGA AATACGGGTA CTAGATCCAC 
TGGAGTCGAC GAAGAAGCGC TTATTGCGAG TGGTATTCTG GATGGAACCA AGAGTTTAAA 
GGACCTTGAT CGTGATCAGG TCATGGTGAA GCTGGGTGAA ACGATTCAGC CTATGAAGGA 
AAGTTTTATA GTAGCGTTCT TAAATTGGAA AGATGCTCGC GAAGAAGATA TGATAGTCCC 
AGAAGAAATC GAAATGGCTA GGATTGAATA CGCAGCGAAA GGTGATCCAG AGCTTGTTGG 
AAGCAAACGT GATGCTGCTG GAAACATGAG AGACGCTACG TCGAAGACGG GCGCGAATGG 
AGAGCCTGTA AAGGTTATTG ATGACGACGC TGAAGATCTA GATTGCGAGT TTTTGAACAA 
TCGCCAAGCA TTCTTGAATC TTTGTCGAGG AAACCATTAT CAATTTGACG AGCTCCGGCG 
AGCAAAGCAT ACTTCATTGA TGCTCCTTTG GCATCTACAT AACAGAGATG CACCAAAATT 
TGTGCAGCAG TGCGTTTCTT GCAGTCGCGA AATCCTCAGT GGCAAACGTT TTCACTGCGA 
CACGTGCCCT GACTATGATC TCTGTCAAGA TTGCTACAAA GACCCTAAGG CAAACAGAGG 
TAACTGTACG CACGCTCTTA AACCACTCGC CGTTGAAGCT GATTCCGGAC AGGATCGCAG 
TGGGCTATCA GAGCAAGAAC GCATGCAACG CCAGCGAAAC CTGTTGTTAC ACATTCAACT 
TATCGAACAC GCTTCAAGGT GTTCCTCTCA GACATGTTCT TCATTAAATT GCGCAAAAAT 
GAAAAAATAT CTGCAGCATG CTCGTGTCTG CAAGGTTAAA GTATTAGGAG GGTGCAAGAT 
TTGCAAAAAG ATCTGGACCT TACTCCGAAT TCATGCGCAG AAATGTAAGG ATACAAATTG 
CCCCATTCCA CAATGCAATG CGATTCGTGA GAAGATGAGG CAACTGCAAA AGCAGCAGCA 
GGCTATGGAC GACCGGCGCC GTCTGGAAAT GAATCGTCAC ATGCGTTTCT CCACCGCAGG 
AGGCTCTTGA GAAACCGAAA ATATTTTTCG TAATATAATA GAGCTTTGTT TTCATATTTT 
A 

 

Protein sequence

MKRLWRHIAN CKDQDCSVQH CLSSRGVLSH YRRCKDALCP ACGPVRETIR KSHEMESQSN 
PQGVPSDNRF MGRDDSFGRS SSVTSPTEQE PKRMRTEHRP SAASIKSARS TPVSAPPLKQ 
EPPRSIGKGE KVAPSAEKDS KGSVDRSLLE SFSVKELETH LRSLERETQL PPAKLKSKCL 
DVLKGLMAHQ HGWVFNGPVD PVELGLVDYF EIIKKPMDLG TIQKRLESSA YHSIDDFKTD 
IFLTFENAMV YNEDGSVVYD MAKQLKVKAE SDMKRLVAQL ETEDLERRQN ERACTLCGSE 
KLLFEPPVYF CNGINCQSQR IRRNSHFYIG GNNQYFWCSP CFNELDDKIP IELADLTVMK 
NNLKKKKNDE IHEESWVQCD TCERWVHQIC GLFNTRQNKE HHSEYCCPKC LLEKRKTVSI 
TPAPKPLLAA DLPRTTLSEW LERSVTKKVE KRKRELAEER SQNEGISLEE ALRQVESGGP 
IIIRQVTAMD RKLEVRELMK KRYAHKNYPD EFPFRCKSIV VFQHLDGVDV ILFALYLYEH 
GEDNPPPNQR TVYISYLDSV HFMRPRKLRT FVYHEILIAY LDYARRRGFA TAHIWACPPL 
KGDDYIFYAK PEDQKTPRDS RLRLWYIDML VECQKRSIVG KVTNMYDIYF ADPNLDATAV 
PYLEGDYFPG EAENIIKMLE EGGGKKLGSV GKKKKSKSSK AQKNKGGNTG TRSTGVDEEA 
LIASGILDGT KSLKDLDRDQ VMVKLGETIQ PMKESFIVAF LNWKDAREED MIVPEEIEMA 
RIEYAAKGDP ELVGSKRDAA GNMRDATSKT GANGEPVKVI DDDAEDLDCE FLNNRQAFLN 
LCRGNHYQFD ELRRAKHTSL MLLWHLHNRD APKFVQQCVS CSREILSGKR FHCDTCPDYD 
LCQDCYKDPK ANRGNCTHAL KPLAVEADSG QDRSGLSEQE RMQRQRNLLL HIQLIEHASR 
CSSQTCSSLN CAKMKKYLQH ARVCKVKVLG GCKICKKIWT LLRIHAQKCK DTNCPIPQCN 
AIREKMRQLQ KQQQAMDDRR RLEMNRHMRF STAGGS