| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_45748 |
|---|
| Symbol | |
|---|
| ID | 7200897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | - |
|---|
| Start bp | 124859 |
|---|
| End bp | 126581 |
|---|
| Gene Length | 1723 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180181 |
|---|
| Protein GI | 219118829 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCTT GCAACACGGA GCCCATACCG CTTCACGAAG GCGTGACATC GCGCCAATTG
AACTGGCGGC AACAAAGCCT CGTGCGACGA GCTGTTTCCT TTGTGCAGGA CGATCTCCAG
CATGTCTTGA GTTTTTCCCC CTTTCTCCGC TCTCCACCCC ATCACAACCA GAGCGCCCTT
TTGCATCGAA CCGAGATTCA AACAGGCCAA CTTTTGGGCT ACGGTGGTTT TTCGGAAGTC
CATGAAATCG TTGGATTTGC CCTGAATCCA AGCGTGTCTC ACCAATTGAC ACCCTTTCAG
CAAAGAGCTC GCCTACTGTT ACAACGTCAA TGTATAGATC CAGTCACAGG ACGGGGTCGT
TACGCGATCA AACATTTGCA GGCACGATTA CTGGAGAAGA ATTCCGACGA ATTTGCCCAT
GCGGCATCAG ACTTGGCCGT GGAAGCCCAA TATCTTGGCG CCATTGAACA CCCGCATATT
TTGTCAGTCC GAGGACTTCC AATTGAAGGT ATTCACGCGC TAGCAGACGG AAAGCACGAC
GCATTTTTCA TAGTCACCGA CCGCTTGGAA GACACTCTCG ATAGACGGGT TCAGAGTTGG
CAAACCAGAG ATGCAGACGT TCTGTACAAA GCCGAGTTGG CTCTTCAGCT CGCCTCGGCT
TTGGAATATT TGCATGAACG AAGGATTGTA TTCCGGGACT TGAAACCCCA AAACATTGGA
TTCACGTCAG ATGGTACCCT GAAGCTATTT GACTTTGGTC TGTGTCGCGA GCTGCCCTCG
CCCGATCTTA CTTGTTTTGC GGACGTTTAC GAAGTCTTTA GCATGTCGGG AGTCGGCACC
CGCCGGTACA TGGCACCGGA AGTTGCGAAC GAAGGCAAGT ACAACTGCAA GGCGGATGTC
TACGGTTGGA GTATGGTAGT ATGGGAAATG TTGAATACCT CGAAACCATA TCCTACATAT
TCGCTTGAAG ATCACAAACA GCGGGTTTGT ATAGAAGGCG AACGACCTCC CATCAATCGG
TCGTGGCCTT TGCAGCTTCA AGGCTTACTA ACGCAAGCCT GGACACCGTT GTTGCCTGAA
CGATTGACTT CACGAGAAGT CTGTGGTATG TTACACGGTA CGATCAATTC CATTAAATTA
TCTTTATTGT TGGATTCGCC GGAGTCTCCG ATTGCGGTTG CGGAGTCGGC TTGGGCTATT
GACCACACTT CAACTGCTAT CACATCGATG TCCTCCTCTT GGGGCCTCGC CAAAGCCAGT
TGCTCTCCCG ACAGTATACG GCTCAGCTTG CCTCCAGATC TTTTGAATGC TTCGTACTCC
TCAGACACTT GCAGTTTGTT GGATAGAAGC TTGATGGCCT TGACTGTCTC TTCCAGCTCG
TCCATGGAAG GGTTTGAAGT GACCTCCACG GCAGAACCTT ATCAGCATCA TCAGTTTCCC
TCCCAAGATG AAACGTATTG GGGCCGCAAC AAATTGGTGC AATACCATTT CTAACCGCAT
GTGCCATTGA GTGTAAGAAA AAGTACATTA GTATCTAGTC CTTGTACAAA TATATATAAT
TAAAGCCGCT CATTTTGTTT ACACTACACA TTCGACATGA ACTAATTGAT GTGCGGATCT
CCCGATAATA AGTCACTATA GTAGCCCCAG ATGAGATCAA TGTGGCCGTA GTGATCGGCG
TCAACGGGAT TAAGGAGAGA AGAGTATTTC TGGTCGGGCA TGG
|
|---|
| Protein sequence | MAPCNTEPIP LHEGVTSRQL NWRQQSLVRR AVSFVQDDLQ HVLSFSPFLR SPPHHNQSAL
LHRTEIQTGQ LLGYGGFSEV HEIVGFALNP SVSHQLTPFQ QRARLLLQRQ CIDPVTGRGR
YAIKHLQARL LEKNSDEFAH AASDLAVEAQ YLGAIEHPHI LSVRGLPIEG IHALADGKHD
AFFIVTDRLE DTLDRRVQSW QTRDADVLYK AELALQLASA LEYLHERRIV FRDLKPQNIG
FTSDGTLKLF DFGLCRELPS PDLTCFADVY EVFSMSGVGT RRYMAPEVAN EGKYNCKADV
YGWSMVVWEM LNTSKPYPTY SLEDHKQRVC IEGERPPINR SWPLQLQGLL TQAWTPLLPE
RLTSREVCGM LHGTINSIKL SLLLDSPESP IAVAESAWAI DHTSTAITSM SSSWGLAKAS
CSPDSIRLSL PPDLLNASYS SDTCSLLDRS LMALTVSSSS SMEGFEVTST AEPYQHHQFP
SQDETYWGRN KLVQYHF
|
|---|
| |