| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_35540 |
|---|
| Symbol | |
|---|
| ID | 7200781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | + |
|---|
| Start bp | 153813 |
|---|
| End bp | 155477 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179985 |
|---|
| Protein GI | 219118425 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0300403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCTT CTTCTGTTCT TATCGGGATC TTCTTTTCTC TTATCGGCGT TTACGCAGAG
GAAATTTCTC TGGAGCCCAG AGAGTCCTTT GGCAAGCAGA AGACACGAAA TGCTCAGGTA
ATCCTCGCTA ATTATTCTGA AGCGGAGATG CTTGGCTTCA AGATCCAGCA CCAAGTGCAC
AGCCAGGCCG ACCTATTTGT CCAGCAGCTA GTAGGAAAGT TGCTACTTGT CAAGAATGAG
ATGATATCAC TTGAGAATCG CGACCTGGCC AATCTCGATA TCTTTACTTC TTACGCCAGT
GTTGTCGCCG ACGGCACAGA GAAGAACGCC GCGTCCTCAC TGTTTGTGAG CAGACAGGAT
CCGGCTATAA CGATTGCACT GGAATCCGAA GGCAACTTGA GGGAAGCCGT ACGCCTTGAC
CCTGAAATCG GTAAAACAAT ATCCATTTCA CGCATTGATT CCCGAAAGGC GGATCGATTT
GTTACGATCA CTGCAGAAGA CTTCGACCAA GACAAACTTG CTAGTTTTGA AGTAGAAGAC
AGAGTAGCTC CATTAGCACA TCAACTCAGA AGCTCACACA AGAGCGGAAC AAGCAGAGAG
AGGTCTCTCC AAGCCTGTCA GCTTTCGGTC CCAGTCCCGG AAGCAAAATT ATTCCCCGTG
ACTCAACGGA GTCATGTTGC TTCGCCCCGC TCGATTCTCA AGAACTCGCT TCTATGAATA
TTTCGTCAGA GACGAAACGG ACAGAAAACT CCGTTAACGA CCTTTCAGTG AATCAATCGG
TCGAGAACGA TAATGTTGTA TCGGCTCACG CGACGACCAG AGAACCCAAA ACAGAATACA
AGTATGAAAC ACGTGAAAGT CAGACTTTGG AGGGACAATG GAATATTATT GGAAAAAAGG
GAAAGTCCAC GATTTCCCAC GATATCGGCA CGAAATCGTC TTTTAGTAGC TATAATCTGA
ATTAACGACA GTTGTAAACC ATCTTTCGTT ACGCCTTGAG GCACTATTCT ATTGATTCTA
CACTGGAGAA GATTGCTTTC TTCTGCCTTT GTACATAGCC ACTGGAATAT TAAGTTGTCA
AAGTCATCGG TGCCTGCTCC GAATATGGTT TTGACGTAAT CGAAGTTGCT GTTGTGGTGG
ATTCCCTTCT CTGTGCTGCC GTAGGTGGAA CTGAAGTAGC GGCTTCCACC GTTGCACAGT
CTGTCATTGC AGGCGCCAGC CAATTCTACG AGGTTGACGG ACTTTGCAAG AAACTCCGCA
TTTCGTATTT GGAAATTCAC TGCAATGCTG GTACCGATCC TATCGCGCCT TTGCTTCAAC
GAGCAGGAAA CTCTGACATT TGTAATACCG ACGCAAATGG ATTATTACAA AACTTCGTGC
GTTACACAGC AGATCAAGGT ATTGCCGCGG ACTTGAACCT TCTGTTTCAC GGCAAGTCAT
TTACTGGCTC GCCATCGATC GGCTGCGCTT TCATTGGAGC GCTCTGTCGC ATTGATGGTG
CGGATTCTGG AGTCAATGAG ATCACCTTTA CATCCGACCC CGTGTCCCGG GCCAAATTGG
TCGCCCACGA GGTGGGCCAT ATCCTAAGTG CTGTTCATAT CAATGATCAA CGGGACATTA
TGTTTCAATC AGTGTGCCCG ACTTGCAACA TGTTTGGAGC CATGA
|
|---|
| Protein sequence | MISSSVLIGI FFSLIGVYAE EISLEPRESF GKQKTRNAQV ILANYSEAEM LGFKIQHQVH
SQADLFVQQL VGKLLLVKNE MISLENRDLA NLDIFTSYAS VVADGTEKNA ASSLFVSRQD
PAITIALESE GNLREAVRLD PEIGKTISIS RIDSRKADRF VTITAEDFDQ DKLASFEVED
RLTQERNKQR EVSPSLSAFG PSPGSKIIPR DSTESCCFAP LDSQELASMN ISSETKRTEN
SVNDLSVNQS VENDNVVSAH ATTREPKTEY KYETRESQTL EGQWNIIGKK GKSTISHDIG
TKSSFIVKVI GACSEYGFDV IEVAVVVDSL LCAAVGGTEV AASTVAQSVI AGASQFYEVD
GLCKKLRISY LEIHCNAGTD PIAPLLQRAG NSDICNTDAN GLLQNFVRYT ADQGIAADLN
LLFHGKSFTG SPSIGCAFIG ALCRIDGADS GVNEITFTSD PVSRAKLVAH ECARLATCLE
P
|
|---|
| |