| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_35490 |
|---|
| Symbol | |
|---|
| ID | 7200757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | - |
|---|
| Start bp | 30658 |
|---|
| End bp | 33120 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180159 |
|---|
| Protein GI | 219118785 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.378921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGATT TGTCGTTCTA TCGGTTCTTT GAAGAGTATG GTACTACTCA GGACGGTGAG
TTTACATCAA TCACCAAACG TTGCCTTGCA ACATTGTCTT ATGGAGTCTT GACCCCTGCC
GGGGGGGGAC GGCCCTGCTA CAACTGTTTG TACATTCTTC CGCCTGCCCA GCAGGACCGG
ATCTTGAAAA TTGTACAATG GTTTCTCTCG AAAAGTCTCA ATGTGGCCAA CAAAACTTGG
CTCAAACTTA CTCCTGATGT CCTCAAGTAT TGGCAACCAG CTTCTGCTAT TGTTGCCCCC
GCTACTCCTG TTGGATCTGA TTCCCGGAAA TCCTTTGTTG AAAGTGCTGC CGCAAAATTT
TGGAAGACAA TCAAAAATCA CTCTGTCCAG TACCCAAAGT TCAGTGAGGA CCGTTTTTAG
GTTACCTGGA ATACAAATAT TTGTATGAAA CTCCGTATCC ACGGTGTTCA ACTGGTTCTT
GACCCGGATT ACTTGCCCCA GACCGTCGAC GAGACGGATG CGTTTGTTGA AATGCAGAAT
TTTGTTTTTG GCGTGTTCAA CGATATTTTG TTGCCCCCTC GTGTGCGTGG AATTCTCCAC
AGGCATGTGA ATGAATTGGA TGCTCAGGCG GTTTACCGCA ACCTTGTTGA CTTGTACGGT
AAAGGTATTA ACGCACAGAT CACGGCCACG GCCATTGAAA CAAAGCTCAC TCTGTATTTG
TTTACGACTT CAAACCCTCG TCAGTCCCCG AGGACGCTGC CTACGGAGGT AGAAGAAAGT
GTACCAGTGC TAGCTTCGTT CACTGGTGTA GGGTCATTTA ATGAAGTCCG CTATAACAAA
ACAGCGAAGG ACCCGAACCC ATAATTAGAT ATTTTCTTTT GAGAACCCCA AGAAACCTCT
TATTGTTTTC TTTTGAGAAC CCCAAGAAAC CTCTTTTGAT TCGGCTATCC AGCCCACCAT
GGTACCGGCC ACCAGGCAAA TGACTAGCGG AGCTGCTTAC TCGCATTTTT TGGATAATGT
ATTTTCACTT CCTCAAGGGC ACCTAATCCG ACTTAGTTTT GAGCAGCAAG GGTATAATTC
TGTTGATGAT CTCCTCAGCA TTTTTGAGAA CGAACTAATG CCCTTGGATA TGTGCCTCCA
GCGAGTCCTG ACACCAATGA AGACCCCCAG TGGACCCCAT TGCTCATGGC GCACCGACAG
ATTCTTCGCC ATTTTCTGCA TTGGCAGGCA TCACTTGAAC GGCAAAAGGG AAGTCCTTTG
GAAAATTCGG AGCTTGTTGC ATTGACTAGT GGAGATTTCA TTTTATATCG ACGCTCGGCA
CTCGGACAAG TCTCTAATGT TCCGGCCACC ACCAGTCCTT CGCTGAACAA CCAGTTAAGT
ACGTCCGCAA AAGCTCAATC GGCAGTCGAC GAATTCAAGC GAGGAGTCAA GCGTGACAAG
ACCCACTATC CTATCCTTAA GGACGACCGA TACTGGGACA ATTTCTACCG GTCTTTCGTG
GTCACCGCGG TATCCCATAA CGTTGAAAAG GTACTTGACC CGTCGTATGC ACCAACGGAC
CCCTCAGAGA AGTCTCTCTT TGAGGAACAG AAGAAATTTG TGTACTCTGC TTTGGAACAT
ACACTTCAGA CAGATATGGT GAAAAACCTT GTTCGCGAAC ATAGTTTTGA CTTCAATGCT
CAAGAAGTTT TCCGTAGGGT TGTCAAGCAC TACACAGAGT CTGCCAGTGC CAAGATTGGG
TCCTCCAACA CTTTGGCCTA CCTCACTACG GCAAAATATG GCACATCCTG GACAGGAACG
GTGGAAGGTT TCATCCTTCA TTGGAAGAAC CATCTCCGCA TCTACAATGA CATGGTCCCT
ATGGCAGAGC AGCTACCTAA ACAGCTTTGC CTCAGTTTGC TTGAAAACGC TGTACACGAC
ATCCCTGAAT TCCGCCAGAT CAAGATCACC GCTACTTTAG ACTTAGCTAA AGGAGGCACT
CCTCTCAACT ACAAAGGTTA CCTGAGTCTA TTGCTTGCCT CTGCTTCTCT ATACAATAAA
GGGAACAACC TTTCTAATTC TCGTAGTGCC AAGAGCAAGC GTAGCGCTTT TTTGACCGAC
CTCTCGTATG ATCAACCGGA CTTCACCGAA GACAATGGAA TTGACTATGA TATTGATCTC
TCTCCTGCAG CGATCTATGA GGCAAATGCT CACAACCGCA AAGCCAGTCC ATCTGGTCAC
CGTAGTTGCA ATCCGGCAAC CAATCGAAAG CGTCCGTATA TCCCTCGCGA GATGTGGAAT
CAGCTTTCTG ATGATGCCAA AGCCATTCTC CAAGGCCTGT CCGCACCCGA CAAGGGCCCT
AATTGTTCCG GCAATGTCTC GCAACGTGCG TTGGAAGCGA ATACCCACAC TCAAACGATA
ATTCTGATGA TGCCAAAGCC ATTCTCCAAG ATCCCGACAA GCCCTCCGAT GTGCGTTTTT
TAG
|
|---|
| Protein sequence | MLDLSFYRFF EEYGTTQDGE FTSITKRCLA TLSYGVLTPA GGGRPCYNCL YILPPAQQDR
ILKIVQWFLS KSLNVANKTW LKLTPDVLKY WQPASAIVAP ATPVGSDSRK SFVESAAAKF
WKTIKNHSVT WNTNICMKLR IHGVQLVLDP DYLPQTVDET DAFVEMQNFV FGVFNDILLP
PRVRGILHRH VNELDAQAVY RNLVDLYGKG INAQITATAI ETKLTLYLFT TSNPPSPDTN
EDPQWTPLLM AHRQILRHFL HWQASLERQK GSPLENSELV ALTSGDFILY RRSALGQVSN
VPATTSPSLN NQLSTSAKAQ SAVDEFKRGV KRDKTHYPIL KDDRYWDNFY RSFVVTAVSH
NVEKVLDPSY APTDPSEKSL FEEQKKFVYS ALEHTLQTDM VKNLVREHSF DFNAQEVFRR
VVKHYTESAS AKIGSSNTLA YLTTAKYGTS WTGTVEGFIL HWKNHLRIYN DMVPMAEQLP
KQLCLSLLEN AVHDIPEFRQ IKITATLDLA KGGTPLNYKG YLSLLLASAS LYNKGNNLSN
SRSAKSKRSA FLTDLSYDQP DFTEDNGIDY DIDLSPAAIY EANAHNRKAS PSGHRSCNPA
TNRKRPYIPR EMWNQLSDDA KAILQGLSAP DKGPNCSGNV SQRALEANTH TQTIILMMPK
PFSKIPTSPP MCVF
|
|---|
| |