Gene PHATRDRAFT_27429 details

Gene Information

• Locus tag: PHATRDRAFT_27429
• Symbol: CPF1
• ID: 7201137
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011676
• Strand: +
• Start bp: 685512
• End bp: 687853
• Gene Length: 2342 bp
• Protein Length: 550 aa
• GC content: 46%
• Product: cryptochrome photolyase family 1
• Protein accession: XP_002180095
• Protein GI: 219118654

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0475276
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGTTTCCCAG CTTTTAATCT ATCGCTATCG TGGAAAAACG AAAATATCAA GCGAATTCGC 
AATCGCTCTG TTGGGAACGA GCTGTTCATC TCTATGCAAG TGACAGCCTA TCAGACGAAA 
AGCGCAAAAC GGAGATGCGC TCGGAAGAAA GCCACTACTC ACCGTATATC AATTCTTCCT 
AGCGTGTTTC CAAGCTGATT GCTCCACTTT TCCAACTATT GCTCTTGTCG GCCCCATCCC 
CGTTCCGTCG TTATCAAATT CGCAGGTTCG CCGCCACTGT GCTCGGGATG GCTAAATCGG 
AAGAGAAAAA ACACGACGTT GCCATCCATT GGTTCCGCAA TGGTCTCCGC TTCCACGACA 
ACCCTTGTTT GCTGGATGCG TGCCAAAAAT CCGAATCACT CCTTCCGATT TACGTAGTCG 
ACCCTGAATT TCCCTTCGCG CAAACTGCTG GGTGCCGCGC CGGTACAATT CGTGCCAATT 
TCTTACTCGA ATCGATAAAC GAAGTCGACG AAAAACTCCG GAAAATGGGT AGTCAGCTCG 
TCGTTGTTCT CGGGAAGAGT CACGAAGTCT TACCCGAAAT TGTCGCCACC ACACAGGCTA 
AGGCATTGTT CTATGAACAA GAAGCAGCCG CTCCTGTGCG AGAGCAAGAC GCCGAGACGA 
TCCAAGCCAT CAAGAATCGT TTGAAAAGGG ACGGTAAAAA TTACGAGTGC AAATTTGAAG 
CCTATGCAAC GCATACGCTT CATCCCATGG AACGGTATTT AGCGCAGTGC AAAGACCATA 
CGGCACCGTC GACGTATGGA AGTTTTACGA AGATTTTCAA CAAAATGAGT GTTGCGAAAG 
AAGTGAACGA AGTCAAGGAG GTACCATCGT TGCCAAACAA GTCAGTTAAA CTTCTTGAAA 
AATCGTTTGC AGAGGCTTTG CGAATGCCTA CGTTAAAAGA TCTTGGATAC GCAGCTGCTG 
CTGATGATAT GAAGAACAGC GGCAAAGGAG GGTATGCTTT TGCAGGGGGA GAAAACGCCG 
CAATCGAGCT TCTTGCAAAG AACATGGCGC GCTCGCAGTG GGTAGCAACG TTTGAAAAAC 
CAAAGACAAG CCCAAATGAT GCCACACGAC CAAGCACTAC TGCTTTGAGT CCTTGTAAGT 
CCATTACCAT TCATTGTTTA AGCCCCAAGC ATGCGCTCAC ATGATCTAAT TCTTCTTCGT 
CATTGTTATT TGTTGGTGGT GCTCAGACGT CAAGCACGGC TGTATATCTC CGCGTCGCTT 
TTATCATGAG TTGTCGAAGG TGTACTCAAA ATACAATAGC AAAGAAACAT CGAAGCCACC 
AGTTTCGCTC CATGGACAAC TAATGTGGCG CGACTTCAAT TATCTGGTCG GATACAGGTA 
TGACTGTTGC TTACACAACA TGAAATACTC CCTGTATGTA TAAACACGAT ATATACGTAG 
CTCATCCTTT CTCCTTTCCC CACAGCACTC CAAACTTTGA CAAAATGATC GACAATCCTA 
TTGCTCGACA AATTCCATGG GACGACGATC CGGATCTTTT GCTAGCCTGG AAGATGTCGA 
AGACGGGATA TCCTTACATC GATGCGATCA TGACCCAACT ACGGGAAACG GGCTGGATTC 
ACCACCTAGC TCGTCATTCC GTTGCTTGCT TCCTCACTCG AGGGGATCTA TGGCAAAGCT 
GGGAAGATGG CGCTACAGTC TTCGAAGAAT ATTTGATTGA CGCTGATTGG AGCATCAACA 
ACTTCAACTG GCAATGGCTT TCTTGCACTG CCCATTTCTA TCAGGTGCGT GTTTACAAAT 
GTCTTTTGTC TTTTATTCAC GTTTTTGCTT TGTCTGACAT TTCTTCAAAA ACTTCTTGTT 
CTTCAGTATT TTCGATGCTA TTCGCCAATT GCTTTCGGTA AAAAGACGGA CCCGTAAGAT 
TTACTGTCCC TCGTTAGCAC ACGAATATTC GGTTTTGGTT TATTTCCTTT TTTCTCACTG 
AGTGTTGTTA TGTCCGCTTT CAGAAATGGC GATTACATTC GCAAATGGTT GCCTCAGTTC 
AAGGACATGC CAGCAAAGTA TATCTACGAA CCTTGGGAAG CTCCCATTGA ACTTCAAAAG 
AAAGTTGGGG TGATTGTCGG TGAAAACTAC CCTCATCCAA TTGTTGACCA CAAGTTGGTC 
AGTAAAAACA ATATGTCACG GATGAAGGAA GCGTACGATG CACAGAAGAA TCGGGAGCCT 
ATGCCAGCCA ACGAATCGCA TAGTAGCGGT TTGAATCGTG ATACTTCACC AAAGCGACAA 
CGTCGCAACT AACAGAAAGT GCAAAGAATC GTTTTTTTAT AACAAATGGG ATTCATAACC 
GA 

 

Protein sequence

MAKSEEKKHD VAIHWFRNGL RFHDNPCLLD ACQKSESLLP IYVVDPEFPF AQTAGCRAGT 
IRANFLLESI NEVDEKLRKM GSQLVVVLGK SHEVLPEIVA TTQAKALFYE QEAAAPVREQ 
DAETIQAIKN RLKRDGKNYE CKFEAYATHT LHPMERYLAQ CKDHTAPSTY GSFTKIFNKM 
SVAKEVNEVK EVPSLPNKSV KLLEKSFAEA LRMPTLKDLG YAAAADDMKN SGKGGYAFAG 
GENAAIELLA KNMARSQWVA TFEKPKTSPN DATRPSTTAL SPYVKHGCIS PRRFYHELSK 
VYSKYNSKET SKPPVSLHGQ LMWRDFNYLV GYSTPNFDKM IDNPIARQIP WDDDPDLLLA 
WKMSKTGYPY IDAIMTQLRE TGWIHHLARH SVACFLTRGD LWQSWEDGAT VFEEYLIDAD 
WSINNFNWQW LSCTAHFYQY FRCYSPIAFG KKTDPNGDYI RKWLPQFKDM PAKYIYEPWE 
APIELQKKVG VIVGENYPHP IVDHKLVSKN NMSRMKEAYD AQKNREPMPA NESHSSGLNR 
DTSPKRQRRN