| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_20360 |
|---|
| Symbol | PDH1 |
|---|
| ID | 7201049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | - |
|---|
| Start bp | 850004 |
|---|
| End bp | 853045 |
|---|
| Gene Length | 3042 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | precursor of dehydrogenase pyruvate dehydrogenase E1, alpha and beta subunits |
|---|
| Protein accession | XP_002180334 |
|---|
| Protein GI | 219119135 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.387314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAAACAGAGT GAGAACACTT GCTCGGAATC GAAGCAATAT AAGACTCTCT ATACCCTACC
TATACCGCAC GCAACACAAC GCAAACTACC AGATATCCTA CACGCATCCT TCCAATCGTC
GAACCGGTCT TATTCTTCCT CTCGAACGAC TGTAACGTAC CCCAACGCCA CACTCCTTCC
TTTCGTTGGT GTTCTTTTAA CGTATCTCAC AGTCCGAAAC ATACAACACT ACTAACGTTA
CTCATTTTCG GTCCACTCTC GTCATGAAGT TCTCCACTGC CACTCTCGCG CTTTGCGTCG
CCACGGCTTC CGCCTTTGTG TAAGTCGAAT CGAACGGACT TTCCAGTCCT CTCGGCACAC
CCAAGATACC CTTTGTTTTA GGGTCTCTCA CCCAGCCTTT TTCTTGTTTT TGTTTGCAGT
CCCGTCGCCT TGCGACCCCA ATCCAATGGC GTGACGACCT ATTCACGAAC AGGCCACGCG
CTCCCAGTGT CTCGAATGTC CACGACCGTG GAAGATACAA CGACGACCGA AGAAGCTTCC
TTTGCGGTAC GTCACCATTG GTGGAAAGAG ACGAGTCTCC GTGCCACATC ACGGCTGCCC
CCATGGGAAG GAATCCTCGA GACTACCAGT CTCCACCTTT TGGCGTTTAC CTCGTTTCTC
ACTCGCACCC CTCTCCTTTT CTCGGTAGCC CATGCGACCC CCCGTCGACT TGCCGTGGCA
CAAAATTACG AAACAACTCC AGGACGCCTT TGGCTACACG GACACCGAAA TCGAAGCCTA
CAATTCCCTC GACGGCGACA AAGAAGCCCT GCTCAAACTG TACAAGGCCA TGATGCTGGC
GCGGGGCTTC GAAAATGCCT GCAATCAGCA GTACATGCAG GGCAAGATCC GCGGATTTAT
GCATCTCGAC AACGGTCAAG AATCCATTCC GGGTTTGGTC GATTACGCCG TCAAGACGCA
GGACAAGAAA TTCTCCTACT ACCGCGAACA CACGCATGCA CTAGCCTCCG GATGCGACCC
GGGGGCCATC ATGGCCGAGC TAATGATGAA GGATACCGGA TCGTGCCGGG GAGCCGGCGG
CTCCATGCAC ATTTTTGACA AGGAAAAGTA CTTTCAGGGT GGCTGGGCCT TGGTCTCCGA
GCAGTTGCCT TACGCAGCCG GCGCCGCCAA GAGTATCTTG CTCGATCGGG CACTCGGTCT
AAGCGACGAC GAAAAAATTG TCAAGGGAAA CGTCGCGCCG CCGGCGGATG ACGATCGAAT
CAGTGTCGTC TTTATTGGGG AAGGTGGGGC CCAGAACGGA CGCATGGCGG AACTGCTCAA
CGCCGCCAGC AAGGACAACC TGCCCCTGCT CATCATTGTT ATCGACAATG GTCGTGCCAT
TAACACATTC ACGCCCGATA TCGCCAGGAA CTCCAACGTT TACCAACAAG GCTTGCACTA
CGGCGTCCCC GGTTTGTTAG TCGATGGTCT GAACGCAGTC GACGTGGCCA AGGGCGGCAA
GGCCGTGGTG GATTACATTC GGGCGGGCAA AGGACCGGCC ATTCTGCAGG TTCACACTTA
CCGCTTCAAC GGCCACTCGC CTGCCGATCC CGAACACGAA CGGGGTCGCA AGGAAGAAAA
GGCGTGGGCG CGCAACGCAC AGGATCCCAT CAAAGCCTTT GAAGACGCTT ACACGGCCAA
CGGCGTCTTT ACCGAGGACG ACCTCAAGGC CGCCAAGAAG GAAATCTTGG CACAAGTCAA
GGCCAGTGTT GAATTCGCCG ACAAGTCGCC AATGCCACCA GTGGAACTTG CCAAGGAACT
GGAATACCCC GACAAGCCCA GTACGGATTA CAATGTTCGC AGTGGACCGG CATGGGCGGA
TGAAGTTAAC CAGCGTACCA TTTCGAGCTC GCAAATGGAA ACAATCCAAG CCCATATTGC
TGCTCTGCAA CAAAAGGCCA AGGATGGTGA GATTTCCATT GGTGACGCCA TTAATCTGGC
CATTCATGAA GAAATGCTTC GTGATCCCAC CACAACTATT CACGCGGAAG ATTTGCAGGC
TGGCTCGTCG TACGACATTC CCAAATTGAC CCAGCAAACC TACGGGCAAA TTCGTGCCGC
GGATGAGATT ATTGATGAAG GACACTTTAT TGGCAAGGCT TTGGGCGAAG CACTCAACGG
TTATCGTCCA ATTGTCGAAC TCATGAATAC CAACTTTGGT ATCTACGGCA TGGCTGAACT
CTCGTCGGCA GGTAACACTT TCGCCACTAC TGGTGGGCAA TTCGACATGC CCATGACGAT
CATCGGTGCT GGTGGTACTG CCCCCGATCA AGCTTTGGGT GCCGAGCACA GTCAACCGTT
TCATGCGTAC GTTATGGGTA TTCCCGGCCT AAAAATTGGC ACCGCCGCAT CACCCGATGC
CGCCTATGGT CTGACTAAAT CCATGATTCG CGACAACGGT CCGTGCTTTT TGTTTGCTCC
CGTGAAAATG ATGAAGGAAT CCAAAGGAAA GGTTGATATT GGCAAATGCA TGCCTCTGAA
CAAGGCAGCA TTACTGCACG AGGCCTCCGA GGCGACCGTC AAGGCAGGCA AGGCCGTGAC
TGTTTTGACG TACCTGCATG GCGTGAAGGA AGCAACCGCG TCAATCGACG CGATCCGGGA
AGAAGGCTTC GATATTGATT TGATTGAATT GCGATCTCTC AAGCCGCTGG ACATGGAAAC
GATTACAACG AGTCTTGCGC GTACCAATAA GATGGCCATT TTGGACGAAT CAACCAAGTC
TGGTGGAGTC GGTGCAACCA TTTCGGCTCA AGTAAGCGAG GAATTGTTTG ATTTGCTAGA
TGCCCCCGTA AAGCGACTCT GCATGGACGA TGCCCCCGTA CCGTACGCGA GTAGTATGGA
AAAGGCTGTC GTAAAGCGTG GCTCCGATTT GATTGAAGGT GTCTTTAATT TGTGCACCAA
AAAATTCTGA ATAAAAAGTG GTAGACCTTG ACTTCTGTCT CTTTTGCCAT GTTCTCTATC
ATGAACCTCA GAACTACTAT ATAAACTTTC GCTATCTATT TA
|
|---|
| Protein sequence | MKFSTATLAL CVATASAFVP VALRPQSNGV TTYSRTGHAL PVSRMSTTVE DTTTTEEASF
APMRPPVDLP WHKITKQLQD AFGYTDTEIE AYNSLDGDKE ALLKLYKAMM LARGFENACN
QQYMQGKIRG FMHLDNGQES IPGLVDYAVK TQDKKFSYYR EHTHALASGC DPGAIMAELM
MKDTGSCRGA GGSMHIFDKE KYFQGGWALV SEQLPYAAGA AKSILLDRAL GLSDDEKIVK
GNVAPPADDD RISVVFIGEG GAQNGRMAEL LNAASKDNLP LLIIVIDNGR AINTFTPDIA
RNSNVYQQGL HYGVPGLLVD GLNAVDVAKG GKAVVDYIRA GKGPAILQVH TYRFNGHSPA
DPEHERGRKE EKAWARNAQD PIKAFEDAYT ANGVFTEDDL KAAKKEILAQ VKASVEFADK
SPMPPVELAK ELEYPDKPST DYNVRSGPAW ADEVNQRTIS SSQMETIQAH IAALQQKAKD
GEISIGDAIN LAIHEEMLRD PTTTIHAEDL QAGSSYDIPK LTQQTYGQIR AADEIIDEGH
FIGKALGEAL NGYRPIVELM NTNFGIYGMA ELSSAGNTFA TTGGQFDMPM TIIGAGGTAP
DQALGAEHSQ PFHAYVMGIP GLKIGTAASP DAAYGLTKSM IRDNGPCFLF APVKMMKESK
GKVDIGKCMP LNKAALLHEA SEATVKAGKA VTVLTYLHGV KEATASIDAI REEGFDIDLI
ELRSLKPLDM ETITTSLART NKMAILDEST KSGGVGATIS AQVSEELFDL LDAPVKRLCM
DDAPVPYASS MEKAVVKRGS DLIEGVFNLC TKKF
|
|---|
| |