Gene PHATRDRAFT_54460 details

Gene Information

• Locus tag: PHATRDRAFT_54460
• Symbol: UBA1
• ID: 7200448
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011675
• Strand: +
• Start bp: 858830
• End bp: 862237
• Gene Length: 3408 bp
• Protein Length: 1108 aa
• GC content: 47%
• Product: ubiquitin-activating enzyme E1, protein 1
• Protein accession: XP_002179732
• Protein GI: 219117892

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTACT GCTGGCGATT TTGTCTGGGC TTGTTATTAG AGCAGGCGCT TTTAAGAGAC 
TCTTTCGGTG TTCGCTTTGT CCCCATTTTC CATCCTTCTC CTCGGAGGGT CAAGGTTCAT 
ATCAGAAATG CACTATCATC TCGAGGCGGT GGGGGTGGGG ATGCCGTCGG TGAAACTGAG 
GATGATGAAG AGCGATACAG CCGTCAAGTT TTCGCTCTCG GCGCTGAAGC ACATAAGCGA 
ATCCGATCGT CTACCGTATA CTTGGATGGG CCAGGACGTT CCGGACTCTA TACGAATGTG 
CCAAGAACCT AGCCCTCTCT GGGGTGAGGA AGCTAGTTTT AGTCAAATCT AGCGAAAAAG 
TCGATGCAGC TTATTTCAAA GGAGAATTAG ATGATCTAGG CCGGGCATAT CACAGAGCTG 
CACGGTCGGA GACTGGGAAG AGTGATGATG ACTGCGATGT ATCCGATGAA GAAGTATTGA 
TGGAGTACTT AAAGCGGCTC AACCCATCAG TTCAGGTATC AGTTGTAAAA TATTCAGACT 
TTCGGCCATT AGATGACAGT TTGCGAGGAG TTCTTCTGTG TGTCGACCGT TGTCACGAGA 
AGCTACTAGT CATGAATGGC TTGGCAAGGC GACACAACCT TGCGTTTGTG GGGACTGAGA 
CAGCTGGCGT GTACGGACGC GTCTTCTGCG ATTTTGGGAC CTCTTTCGAA GTAAATGACA 
CTGATGGAGA GACTCCACTG GTGATTCCGC TAGATCGAGT TGAGCGAGGG ATTAGTGACG 
AAATACTTTT TGTAACATGC CTTGAGGGGC AACAGCACGA TGTTTCCAAG GGTGAAGAAA 
TCAGGTTCAT CGATCCTAAC GGCGATTCAT CAGAGCAGAA ATGCACGGTC ATCGAAGTGC 
ACACTCCTTT GCGACTATCG ATTGAGGTTG ACAAAAAAGG CGGATCTTGT CAAGAGTGGA 
TCGAAAGTGT AAATAAGAAA TATGTGGCAT TCTCCCGGAT CAAGGCTTCT AAGAAACTTT 
CCTTTGACGA TCTCGCAATA GCGAGTAAAA AAGCGTCCAG CGATGCTTCC ATTTTCACTC 
CTAGCGATTT AGGAAAGAGT TTTGATGACA ACCGAAGAGC GGCACTTTTC GCTTGTTTCC 
GAGCTGCATC AAGTTTTGTT GGGGATCATC TAAGATGGGC TGACGACAAC GACTTGGATG 
ATTTCTGTGA GCTAGTCCGG ACGTTTATGT CTAACTGCGA GTCTGAGCAC TGCTTTCTTT 
CTGAATCGCA GCATTTTAAT GTTGAACAGT TTCTTGAGGT TGGAAGAGCG AAGTTCAGCC 
CTATCCAGGC TTTCTTTGGT GCGATAGCAT CTCAAGAGGC ATTAAAAGCG TTGACCGGTC 
TTTACCACCC TATCCAACAA TTCCTTCTGT ACGATTGCGA CGAAATTTTG AACTCTCCTT 
CAGATCGCAC ATGTTCTGTA AACGAAAAGG AGGGAAGTGA CCGAAATACA TGTGGACTTC 
GCCATATACT GGGTGATTCT ATCGTTGAAG ATCTACAATC CATGAGAGTG TTTGTAGTGG 
GTGCTGGAGC AATAGGCTGC GAGATCCTTA AGAATCTGGC GGCAATGGGT ATAGGATCCA 
AAAGCAAAGG CCGAGTAATT ATCACGGACA TGGATACTAT TGAAAAATCC AATTTAAGCC 
GACAGCTACT TTTTCGCGAC AGCGACGTCG GTAAATTCAA GAGTAGCGCT GCCACTCAAG 
CTATCCTTCG ATTCAACAAC AAAATGAAAA TTGATTCTCA TTCCAGCAAA GTTGGAGACT 
CCGAGCACAA TCCCTTTGAT GATCTGTTTT GGCGCAAAGG TGTTGACATT GTGTTGAATG 
CACTTGACAA CATGGAAGCT CGCTTTTTTA CAGACAGACA ATGTGTTGCC AATGGCAAAC 
CTTTGATTGA CTCCGGAACG CTTGGTCCGA AGGGAAATGT CCAAGTCGTT ATTCCCCATA 
AAAGCGAATC GTATTCGTCG AGTGCTGACC CGCCCGATCC TGCGATAGCG GTGTGTACGC 
TTAAGAACTT CCCTTATGCC ATTTCCCACA CTATTCAATG GGGACGTGAT CTATTTGAGG 
ACGTGTTTTC GAGGAGACCA TCTCAAGTCA ATGACGCAAG GGACTCTTTG TCCTCAACCT 
GCGTCGAAGC CTTCGTTTCA AGATTGATTC AGGAACGAGG AGAGAATGGA TTTCAACAAT 
TTGCTGCGGA ACTGAAGGAA GATGTGAGTC CCGATCTCGA GTCGTCAGAT ATACGGGCGC 
ACTCGTTAGA GTGGGCTGCG TCTACTGCAG TCAAACTTTT TCGGGATTCT ATAGAGACGC 
TTCTTCTGAA ACATCCCCCG GGAAGTTTGG ACGATGATGG CGAACCCTTT TGGAGTGGAA 
CACGGCGACA GCCACGTGTT TTATCGTTCT CTGGTTCCGT ACCTCTTGAT GCGATGCAGT 
CAAGTGTTAA CGAGAATCTC ATCGACTTTG TGAGGTATGC CGCTCGGTTG CGGGCAGAGA 
TGTACGCTAG CAAGCCTATT CGTGACCCTT TTGAATTCTC ACGAAATGAT GCTGAGGCAA 
GTTTAAACAG TGCAGAGCAG GCTCAACCAT CTGACAAAGA AGTGATGGAC ACAGACACAG 
TCAATGTTCT TATTGATTCT CTCAGGCGAC TATCATCTTT TTCAAAACCC CTAAATACCG 
CCGAGTTTGA GAAAGATGAC GATTCCAATG GACACATTGC GTTTGTTACT GCTGCTAGCA 
ATCTTCGAGC CATGAGCTAT GGAATTCCGC CTGTAAATAG ATTGCAAACA AGGCGAATAG 
CGGGGAACAT TGTTCCTGCT GTAATCTCGA CAACTGCAGC CGTCTCAGCT CTTTCATGCA 
TTGAACTCGT CAAGCTTGCG CAGGGAGCGC AATTGAAATT ACACAGGAAT GCCTTCATGA 
ATCTGGCACT ACCGTTTTTC GCTTTCACTT CCCCACTTCC TGCGGAGGTA ATGCCGGGCC 
TGCAAGGTCG TCAGTACACA ATATGGGATC GTTTGAAGGT GCGGGAAAGC AAGAAGGCCC 
TGGCAAAGGG TGGAATATCC CTAAGGAAGC TTATTCGTCG AATAAAACAA CTAGCTTCTA 
CGAACCCCAA AAAAGTGTCA GTTTTGTCCA TATCTTTTGG TCCCTACCTC CTGTATGCAA 
GCTTCCTCCA CGATGATGAC AAAAATCATC TCAAGTCCTC CTTGTGGAAC ATTCTTGAAG 
AATTGACCGA AGTCGACGAC GACTTTGTAT CTACTCGAAG CAACGACAAC AGGTCAACTG 
AATATTCGCC GACACAGAAA TTTGTGGATT TATCGGTCAT CGTTGAAGAT CCCGACAATG 
GCAGTGAATG CGAGTTGCCA TTGGTGAGGG TGTTTCGGAG ATTTCTAT 

 

Protein sequence

MNYCWRFCLG LLLEQALLRD SFGVRFVPIF HPSPRRVKVH IRNALSSRGG GGGDAVGETE 
DDEERYSRQV FALGAEAHKR IRSSTVYLDG PGLDAAYFKG ELDDLGRAYH RAARSETGKS 
DDDCDVSDEE VLMEYLKRLN PSVQVSVVKY SDFRPLDDSL RGVLLCVDRC HEKLLVMNGL 
ARRHNLAFVG TETAGVYGRV FCDFGTSFEV NDTDGETPLV IPLDRVERGI SDEILFVTCL 
EGQQHDVSKG EEIRFIDPNG DSSEQKCTVI EVHTPLRLSI EVDKKGGSCQ EWIESVNKKY 
VAFSRIKASK KLSFDDLAIA SKKASSDASI FTPSDLGKSF DDNRRAALFA CFRAASSFVG 
DHLRWADDND LDDFCELVRT FMSNCESEHC FLSESQHFNV EQFLEVGRAK FSPIQAFFGA 
IASQEALKAL TGLYHPIQQF LLYDCDEILN SPSDRTCSVN EKEGSDRNTC GLRHILGDSI 
VEDLQSMRVF VVGAGAIGCE ILKNLAAMGI GSKSKGRVII TDMDTIEKSN LSRQLLFRDS 
DVGKFKSSAA TQAILRFNNK MKIDSHSSKV GDSEHNPFDD LFWRKGVDIV LNALDNMEAR 
FFTDRQCVAN GKPLIDSGTL GPKGNVQVVI PHKSESYSSS ADPPDPAIAV CTLKNFPYAI 
SHTIQWGRDL FEDVFSRRPS QVNDARDSLS STCVEAFVSR LIQERGENGF QQFAAELKED 
VSPDLESSDI RAHSLEWAAS TAVKLFRDSI ETLLLKHPPG SLDDDGEPFW SGTRRQPRVL 
SFSGSVPLDA MQSSVNENLI DFVRYAARLR AEMYASKPIR DPFEFSRNDA EASLNSAEQA 
QPSDKEVMDT DTVNVLIDSL RRLSSFSKPL NTAEFEKDDD SNGHIAFVTA ASNLRAMSYG 
IPPVNRLQTR RIAGNIVPAV ISTTAAVSAL SCIELVKLAQ GAQLKLHRNA FMNLALPFFA 
FTSPLPAEVM PGLQGRQYTI WDRLKVRESK KALAKGGISL RKLIRRIKQL ASTNPKKVSV 
LSISFGPYLL YASFLHDDDK NHLKSSLWNI LEELTEVDDD FVSTRSNDNR STEYSPTQKF 
VDLSVIVEDP DNGSECELPL VRVFRRFL