| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_45560 |
|---|
| Symbol | |
|---|
| ID | 7200741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | - |
|---|
| Start bp | 548212 |
|---|
| End bp | 549979 |
|---|
| Gene Length | 1768 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179866 |
|---|
| Protein GI | 219118172 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.918277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCACGAAAGA AAAAGTGTTC AATCTGCCAG TAGCGTGGGA GCGGTGTATG AATCTCAAAT
TATTGACAGT GAGGAAGGTT ACTGCTAACT TGAACATTTT TGTGGAAAAA AGTGGCACTC
AACTATGGAG AAGGCCGAAA ACGTTGCTGT TGCTACACTT GCTGGAATGA ATATGGAGAA
GGAAAGCACT CTGATCATGC CAGGCGATGC TAAAGATGAG GAGGGCATGG CAACTGAGAA
GGATGGGAAA CATGTGCTGA AGCGAAGCAT ACCGGGTGCC ACGAGAGCGG CTAACTTGAA
ACAGAAGAGA AACGACGAGG ACGATTGTTT TCCAGTTCAG CCGCACATTA TTCAGGTCAT
TAAGAAGCCA CGAACACACA TGAACCATTC CTATCGTGAT TTTTCCCTTG TGCCCTCGAT
ACAAAACGAG CCGGCGATGC CCACCAATAT CGATGACATG TCTTTCCCTC AAAAGGTGCA
CGATATTCTT CGTCAAGAAG TTTTCCAAAA ATGGGTTTCG TGGTTACCAC ACGGGCGCGC
ATTTCGTGTC AGTAAGTAGG CAGCAACTAT GGGGACAGCG ATATTTCTAT TCATTGTACT
AACAGTTTGC TCCCGCTCTT CGATAGTCGT CCCTGTTGCG TTCGAGAAAA ACATTTCCGA
AAAATACTTT GGTCACAAGC GATACTCAAG CTTCTTGCGA CAGCTCTCCA ACCACCATTT
CAAGCATGTC TCCCAAGGTC CTGATCGAAA TTGCTATTAC CATGAGTTTA TGCTCCGTGG
TCTTCCTCAC CTTTGCAAGT ACATGCCTAC ACCCAAGGAT GCACGTCGGT TGATTGCTGA
CCCCCAGAAC GAACCCAACT TTTATGAGAT TAGCAAAAAG TATCCTCTTC CAGACGATCC
TGAATTCGGT AAGGGCGAAA CATCTGAGAA CGCATCAAAA AAAAATGCAA CAGCCCCTAT
TCTTGTAGAT GCACAAGAAT GCCTTTGTCC CGCATCCGGG CCAGCATCTG CGGTGGGATG
GACCGTTCAG CCTGCGCCGA AATGGACTTC AGAAGACTTT TTATATCAAT GTCACGGTAC
CACGGTGAGT GCGTTTCCAA CAATGGCTCC TTTCTTTCCC ACAGATATGG ATGGCGGCAA
CGCAATGTTT GCGGCAGCTT TTTTTCAAGC GACCCTCGCA GCCCAAGTAC ATGCACACCA
AAATGTAGCA ATTCCTGCGC AAAGCACTTC CGAACCGTTT AAAGTAATCT TAGGGACACG
TGCGGAAGGC GAACAAATGG ATCCTTTGCC AGCGAGCCAA GATAATCCTG AGCTGGGCTT
CCGTAATACT ACATAAAATG ATTTGTGTTT CGTCTCTTGT ACGCAAGAAA GACCTTCAGT
CCAACCAACC GCATGGGATA TGTTTAGCAG TAAAATATCA GGCGCTAAGA ATTGAACATG
CACGTATAGT ATAAGGAGTC TCGCAAAGCT TGCGGAAGCG CGTGATCGTT TTCATCGGAT
TTGAGCTTTC AGATGGTCGC GATGAAGGGA GACCCATCCC GACCCGAAGG GTCGTTTACA
CGGAAGTCGA ACTTCATCCA TGATAGCCCG GCGCTGTTGA ATAAGCCTCA GGTTTTCGAA
ATAGAGAAAG GCTTCTCTGA GAAGATCGAG GGAATGTACC TGGGACCGAC AGGCGAAGAG
CATGTGCTTC TTTTTTGAGT TGGAACTTGA GCTCTTACTT TCAGTTGACT GTGAATTACC
ATGGAGATTT CACAAGCTGG AAATCTTA
|
|---|
| Protein sequence | MEKAENVAVA TLAGMNMEKE STLIMPGDAK DEEGMATEKD GKHVLKRSIP GATRAANLKQ
KRNDEDDCFP VQPHIIQVIK KPRTHMNHSY RDFSLVPSIQ NEPAMPTNID DMSFPQKVHD
ILRQEVFQKW VSWLPHGRAF RVICSRSSIV VPVAFEKNIS EKYFGHKRYS SFLRQLSNHH
FKHVSQGPDR NCYYHEFMLR GLPHLCKYMP TPKDARRLIA DPQNEPNFYE ISKKYPLPDD
PEFGKGETSE NASKKNATAP ILVDAQECLC PASGPASAVG WTVQPAPKWT SEDFLYQCHG
TTVSAFPTMA PFFPTDMDGG NAMFAAAFFQ ATLAAQVHAH QNVAIPAQST SEPFKVILGT
RAEGEQMDPL PASQDNPELG FRNTT
|
|---|
| |