| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_35233 |
|---|
| Symbol | |
|---|
| ID | 7200718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | + |
|---|
| Start bp | 393598 |
|---|
| End bp | 396427 |
|---|
| Gene Length | 2830 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179637 |
|---|
| Protein GI | 219117693 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGGA ATTCCAATCA ACAACACGTG GGGGATTCCC GTCGCGTAGC GCTCGGTACC
CGTGTGCCGT TGGGACGACG CGGAACCAAG GACGATGCGA AACCCACTCC CAAGCCGTCG
TCGTCGTTGC ACGTGACGTT CCCGCGAACA ACGCCCCTCG ATAAGGAAAA TGGACACGGA
ATCCGTCGTG ACGGCCGGCC GACAACAACC GCAACGAAGA CTAGTACTAC TGGTAGTGGT
AGTAGTGCTC GTCTGGATGC CAAGAGCACG ACGACGACGA CGACTCCACG TGAGGTGAGC
TTTCGCAGTG TGCTACGGGC CACCGTTACA CCCCGACGTC CCCACCAAAG TACCGTTCCG
TCACGCTTGC CACCGCACAC TCCGGCGGTT CCCGCACCCG GACGACACCA GATCGCGACA
ACGCCGCGGT CACTACTCAC CAACGAACTC GAGTTACTGG ACGGTGACGA TACCTTCTTG
TGCTCACCAG CCGTCGGGAC ACCGAGACTG CCTTTACCAA CGTTTCACAT GCCGGAAGCG
ACTCCAGCAA TCCAGGAATC GGCAAAAGCG GTTGAGGGTC CCGTACCGTC CATGGAACCC
ACTAGGTCTA CCCAGCACCC GCGTCTCCCA CCCGTAGTTC CGGCTGTCCC GATTTCCGTT
CCCAACTCCC AGGCTCCCTC CACCCGACCT CCCGTAGCGG AGCCACGCAT GCGTCCACAG
GCCAGTCAAC AACTACCTAC CACTAATCGC ACAGTTGTAT CCCGTGTTGA GGCTCCTCCG
CCTTCCACGC AATCGCGCTG GGCCCGGAAT CGTCTCTCTA CCTACCCGAC ACCTTCGCCG
ACTCCCTTTA CGCCACGAGG CGTCTGTATG GACTTGTCCG ACATGTTTCA AGACGCTTCG
TTTTCTACTC GCGCCACGGC ACACAAAAGT GCTTCTCGTG CTCACGTGCC GCACTCCGTT
ACCAGTCGAC GCGCCTTGCT CGCCTCCGTC GCCAAACCCA CTCCGGCGGA TACTTCTCTA
CTAGACAATG AACAGGATCA CGACTGGGCT GATCAACAAT GTCAGGCTTT TTCTTCCTGG
CTCAACTACA CCTTTACTCC CTCGGAAGAC AAGGACCACG AAGCGGCCTT GGCGTCGGAA
ACCACGCACG AAAGGGGTGT CGCCTTACGC ACCCTCGTAC TACACCAACG CATGGCCCAA
GCCCGTCGCT CCGCCCTCGC CCTCTTTCAC ACCGATCCCG TCCTCCAAAA GAGCCGTCAA
CGATTGTTGC AGGAAATCAG CAAGGGAAAA CTACGGATTC GCCCGGACCG GGATTTGGCC
GTCAATCTCA CGCTCCGCAA CCAAGCCGTC GCACTCTGTT TGTCCTACTC CACACCCTGG
CTCCGACTCG GGTTGGAAAC ATTGTTCGGG GAAAGCATAC TGCCGTCCGT ACCGCACCAC
TTTTCGCCCC ACGGTAACCC TGTCGCCTCG CGCAAGGTGC CCACTACGCG CATGAAAGCG
GCGCTCCAGA CCTTTTTGAT TCAACGCGTC TTGTCCGACG ATCTCGTCCT GGCCAAGTAC
ACCAAAGGAC TCTGCAAGGT CCCGTCCGGT AGCTTCGAAA CCAAATACCG AGCCGAAATA
CGCAACCTCG CCCTGTACCG TCTCTTGCTC CTTTTTCTCT TTCTGGATCG TGCGAAAGAA
AATAATCTAT TGGACAAGGC ACCGCGATTG TTCGCCAAAA CGGCCTCGGT CAAATCGACC
CGGGAAGTAC TGCTCACGTT TTGCCGCGAT TTCTTGTCGT CCGAAGGTGA TTTCGTTAAA
CACTTGTCCC GCATGGGAAT CCAAGTGCAC TACAAGCAAG AACCTGTGGA CGAGTTGGAT
TTCACCATTA CCAACCTTGC CGTAGATCTG CGCGACGGAG TGCGCTTGGC ACGCTTGCTC
GAAATTCTCT CGCATGCACC GCGCAAGTCG CTTTTGGTGA AACTGCGGTT ACCAGCTGTC
TCTCGTCTGC AAAAGCTCCA CAATGTCGGG CTGGTACTCC GACGTTTTCG GAACATGGGG
GTGCCCCTGT CGGACGAAGT AGTCGCTCAC CATATTGTCG ACGGACACCG CGAAATGGTG
CTCAAGCTCA TGTGGGCTGT GGTTGCCCAT TGTTGTTTGA ACGATCTCGT AAACGTTCAT
GCGGTCGAAG CCGAAATTGC TCGTGTGGAA CGCGCCCACC GGCAAGCCGT TGTTTACCAG
AATTACGAAC CCGACGTTAA GGTCCCTTCC GTACTGGAAG AGTTGCATTC TCTCCTACTA
CGCTGGTGCC ATGCCGTCTG CTCCACCTTG GGAACGGCGG TCCGGAACCT GACGACCGAC
TTTGCCGACG GCCGTGCCAT TTGTCTGTTG ATTCACTACT ATCACCCCGC ACTACTGCGC
TTGTCCGAGA TTCGACCAAC GTCACGTTTT TCGCCACGAT CGCTGACGCA AGTCCGTGCC
TTGGAAAATG AAATGTACAA TTCACAACTG GCCAACACAC GCATGTCCGA GCTGGGTGGT
ATTCCGAGAA TCGTGCCCGA GTGCGATACG AACAACGTCC CGGAAGCTAA GTCCATGCTA
CTCTGCCTTT CCTTTCTGTG TTCCCGTCTG TTGGAGTCTA GTACAGAGAT CCGTGCGATT
CTTCTCATTC AGAATCGGTA CCGCGCCTAC CGGAAAGCTC GGTTGCGTCG ACGACAACGG
GTAGTGGCCC GTTTTTTGTG GCAAGTCTGG CAGTCGCATA AACATAGATA CTACGCCAAT
CAAGCATTCC ACTACGGCCC AGCCGTCCGG ATCATCGAAC GATTCGTACG AAATGGTAAG
GAGAGACTGA
|
|---|
| Protein sequence | MIGNSNQQHV GDSRRVALGT RVPLGRRGTK DDAKPTPKPS SSLHVTFPRT TPLDKENGHG
IRRDGRPTTT ATKTSTTGSG SSARLDAKST TTTTTPREVS FRSVLRATVT PRRPHQSTVP
SRLPPHTPAV PAPGRHQIAT TPRSLLTNEL ELLDGDDTFL CSPAVGTPRL PLPTFHMPEA
TPAIQESAKA VEGPVPSMEP TRSTQHPRLP PVVPAVPISV PNSQAPSTRP PVAEPRMRPQ
ASQQLPTTNR TVVSRVEAPP PSTQSRWARN RLSTYPTPSP TPFTPRGVCM DLSDMFQDAS
FSTRATAHKS ASRAHVPHSV TSRRALLASV AKPTPADTSL LDNEQDHDWA DQQCQAFSSW
LNYTFTPSED KDHEAALASE TTHERGVALR TLVLHQRMAQ ARRSALALFH TDPVLQKSRQ
RLLQEISKGK LRIRPDRDLA VNLTLRNQAV ALCLSYSTPW LRLGLETLFG ESILPSVPHH
FSPHGNPVAS RKVPTTRMKA ALQTFLIQRV LSDDLVLAKY TKGLCKVPSG SFETKYRAEI
RNLALYRLLL LFLFLDRAKE NNLLDKAPRL FAKTASVKST REVLLTFCRD FLSSEGDFVK
HLSRMGIQVH YKQEPVDELD FTITNLAVDL RDGVRLARLL EILSHAPRKS LLVKLRLPAV
SRLQKLHNVG LVLRRFRNMG VPLSDEVVAH HIVDGHREMV LKLMWAVVAH CCLNDLVNVH
AVEAEIARVE RAHRQAVVYQ NYEPDVKVPS VLEELHSLLL RWCHAVCSTL GTAVRNLTTD
FADGRAICLL IHYYHPALLR LSEIRPTSRF SPRSLTQVRA LENEMYNSQL ANTRMSELGG
IPRIVPECDT NNVPEAKSML LCLSFLCSRL LESSTEIRAI LLIQNRYRAY RKARLRRRQR
HSTTAQPSGS SNDSYEMVRR D
|
|---|
| |