| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_2648 |
|---|
| Symbol | CDH1 |
|---|
| ID | 7200617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | - |
|---|
| Start bp | 507721 |
|---|
| End bp | 508698 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179858 |
|---|
| Protein GI | 219118155 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AAGCGTAAGC GACGCATTTC CAAAGTTCCT TTCAAGGTCC TCGATGCTCC AGCTCTCAAG
GATGATTACT ACCTCAATCT CGTCGACTGG TCTTCGCAAA ATGTTTTGGC GGTTGCTCTC
GGGTCATGCG TATACCTGTG GAGTGCTTGC AATTCAAAAG TGACCAAATT GTGCGATCTG
TCATTGTCCA ATTCTTCTTC CTCAGCATCG GAAGATTCTG TTACGTCGGT TTCTTGGGCA
CAGCGAGGTA CGCATTTGGC CGTTGGGACT AATCGCGGAG ACGTAGAGCT GTGGGATACA
ACAAAGGGCA AGCGCATACG CTCCATGCCC GGTCATACGG CACGCGTCGG AACTTTGGCC
TGGCACGGTC CGACGTTAGC GAGCGGCAGT CGCGATCGTC TTATTTTCTT GCGTGACGTG
CGCGTACAAT CGGCCTACAC AGACCAGTTG GATTTTCACA AACAAGAAGT CTGCGGTCTT
AAATGGTCCT TTGACGATCC AGGTTTGCTT GCATCGGGCG GCAACGACAA CGACTTGCAC
GTGATCGATA GCCGTAATCC ATCGTCTCCC GTCCACAAGT TTTCCGAACA CCGTGCTGCG
GTCAAGGCTA TTGCCTGGTC GCCGCATCAG CACGGGCTTT TGGCTAGCGG AGGAGGGACA
TCCGATCGCT GCATTCGCTT TTGGAATACG CAAAGTGGTG TCGCTCTCCA CAAAATCGAT
ACCGGTAGCC AAGTTTGCAA CATTGCGTGG TCTCGTAATT GCAACGAGAT TGTGAGCACG
CATGGATATT CGCTGAACCA GATCATCGTT TGGAGGTATC CTAGTATGAG CAAGGTCGCA
ACGTTGACGG GACATTCTTA TAGAGTTTTG TATTTGGCTA TGTCACCCGA CGGATCTACG
GTAGTCACTG GCGCAGGTGA TGAGACTCTA CGCTTCTGGC AAATCTTCCC TGGTCCGCAA
TCTGACAACA AGGACAAT
|
|---|
| Protein sequence | KRKRRISKVP FKVLDAPALK DDYYLNLVDW SSQNVLAVAL GSCVYLWSAC NSKVTKLCDL
SLSNSSSSAS EDSVTSVSWA QRGTHLAVGT NRGDVELWDT TKGKRIRSMP GHTARVGTLA
WHGPTLASGS RDRLIFLRDV RVQSAYTDQL DFHKQEVCGL KWSFDDPGLL ASGGNDNDLH
VIDSRNPSSP VHKFSEHRAA VKAIAWSPHQ HGLLASGGGT SDRCIRFWNT QSGVALHKID
TGSQVCNIAW SRNCNEIVST HGYSLNQIIV WRYPSMSKVA TLTGHSYRVL YLAMSPDGST
VVTGAGDETL RFWQIFPGPQ SDNKDN
|
|---|
| |