| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_19901 |
|---|
| Symbol | |
|---|
| ID | 7200552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | - |
|---|
| Start bp | 174994 |
|---|
| End bp | 177906 |
|---|
| Gene Length | 2913 bp |
|---|
| Protein Length | 900 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179808 |
|---|
| Protein GI | 219118050 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGCTCGCGCA CTCACCGCCG CACATTATCG AGTGCGCCGC CGCCGAAGCC GGGGCCTCGC
AAGATGCCTG TCATCTCCCG CCGGCCACGC GGTTCGCCGC CGTCGGACAA AAGGGCGCCA
CGCTCTGGAT GACGGGATGT TCCGGTGCCG GCAAAACCAC CATTGCCACC GCACTCGAAG
ATCAACTCGT CAAGAGTTAC GGGAAACACG TCTACCGTCT GGACGGGGAT AACCTCCGCA
CCGGACTCAA CCGTGATTTG GGATTCTCCG AAGCCGATCG CGCCGAGTCG GTCCGACGGA
CCGGGGAACT CGCCACACTC TTTGCCGACG CCGGTGTCGT CACGCTCGTC GGACTCATCT
CGCCCTACCG CAAGGATCGC GACGCCGTAC GCAAACGTCA CGTCGACCAA GGCATTCCCT
TTTACGAAGT ATTCCTCGAC GTGCCCGTGG ATGAACTCAA AAAACGCGAT CCCAAGGGAC
AGTACGCTCG TGTCGAGTCC GGAGAACTCA AACACTTTAC CTGCATCGAC GACCCCTATG
ATGAACCCTT GCAACCAGAA ATTACCCTCA AAACGCACGA ACTCACCATT GAACAGTCGG
TGCAGATTCT CTTTCGACGA CTCGAACGAG ACGGAATTCT GGTCGGGGCG CCCAAACTTA
GTCCGCCCGG TCTGCCCAAC CCCGACGGGG ACGTCTTGGT GGACTTGCAC GTTCCCGACG
AATCCAAAGA AGCCCGTCGC GCCGAGGCGG CGACCCTCCC CAAGGTCTTG ATCAACGACA
TTGATCTCAA CTGGTTGCAA ACCATTGGGG AAGGCTGGGC CTCACCGCTC CGAGGTTTCA
TGCGCGAAGG CACACTGTTG GAAACCCTGC ACTTTAATTC GATCCTCACG GATCCCTTCA
ACCTCACGGG CAACGCCCTG CGACTGGAAA CCCGCACGAA CTTTGATCAC TTTTCCGCCC
ATCCGGCCCC CCAACGCGTC TCCATGCCCA TTCCCATCAC CCTCTCCTGT ACATCTTTTA
CCAAGGACCT CATTGACGCC TCGTCCCACA ACGCCGTCGC TTTGGTGACA CAAATGGGAC
ACACCGTGGC CATTCTACGC GATCCCGAAG TCTACGCCAA CCGCAAGGAA GAAATCGTGA
CGCGTATGTA CGGTGTCGTG GATCCGGATC ATCCCTACAT TCAACACATT TATCGGGGCG
GCGACTACTT GATTGGCGGA GAAATCGAAC TGCTGGATCG CATCCGCTAC AATGACGGCC
TCGACCAGTG GCGCAAAACA GCGACGGAGC TCGTGCAAGA GTTCCAGAGC AAAGGGGCCG
ACACGGTGTA CGCCTTCCAA ACGCGTAACC CGACCCACGC GGGTCACGCG TACCTGATGC
GTTCCGCCGG TGAAGACCTG CGTCGTCAGG GGTACCAGAA ACCCGTCCTG TGGTTGAGTC
CCCTGGGCGG TTGGACCAAG GCCGACGACG TGCCGCTCGA TGTGCGCGTC AAACAGCACG
AACAAGTCCT GCAAGCGGGC ACCACCCATC CCGGTGGCCT CGATCCGGAA TCCACCGTCA
TGGCTATTTG GCCCGCTCCC ATGGTCTACG CCGGACCCAC CGAAGTCCAG TTCCACGCCA
AGTCACGGCG CTCCGCGGGA GCCTCGTACT TTGTGGTCGG CCGCGATCCC GCCGGAATGA
AAGGATCGCC CAACGCGGTG GCGCACCCGG ACGATGACCT CTACGACGGT AACCACGGAC
GTTACGTTCT GCAGAACTCG CCGGGCCTCG GAGATATGAA GATGCTGAGC TTTGTCAAAG
TCATGTACGA CACCACCGAC AATATTATGA AGATTCCGGA CGAAGCGCGG CTGGCGGACT
TTATCAGTAT TTCGGGCAGT AAAATGCGAC TGTTGGCCCG GAACGGGGCC ACCCCCTGCA
GTCCCACCAA TATTCCGACG GATCTGGTCG AAGCCAACTG CGTCCCCAGC GGATTCATGG
TACCGGACGG TTGGAATCAA GTGGTCGACT ACTACCGGAA TATTGATGAT GTGCAACGCT
GGACGCCGTG GAGTCAACCT CGCGTAGATC CCCCCACGGC ACCGCGCACC ACGTATCAAG
GCCAGTTTGG TTCCCGATCC TTCCACCTGA CTAGTACAGA ATACGAATCC TTCTGGCACG
ACATTCCCCT GAGTCCATCG GGGCAATCCG AAACCGTAGT CAACATGGTG ACGGAAATTC
CCATGTATTG CACGGCCAAA ATGGAGATTC AAAAGATGCT GTCCAACAGT CCCATTGCTC
AGGACACCAA CAGCGACGGT TCGCCGCGTC ACTACAGCTA CGGTACGCCC TTTTTCAACT
ATGGTCTCAT TCCACAAACA TGGGAAGATC CCAACCTAAA ATCTGCGCAA GGGTACGGTG
GGGACAACGA TCCGCTCGAC GTTATCGAAT TGGGGTCGTC GCCCTTGCAA ATGGGTGGAC
TAACGCCGTG TCGGGTGTTG GGATCGTTTG AGCTCATTGA CGAAGGCGAA ACGGACCACA
AGATTCTGTG CATTGCCGTG GACGACAAAG ACGCCAACCA AATCCATTCC TTGGAAGATT
TGGAGCGTGT CAAGCCGGGT CACTTGGACA AGCTCCGGGA TTGGTTGAAG CGGTACAAGA
CGAGCGAGGG CAAAGCGGAA AACAATTTGG CGTCTGAAAC GCCGCGCACC GCGATGGAAG
CCGTAGGCGT CATTCAAGAA ACGCACGGAC GCTGGCGATC ATTGTGTGGT AAGGATGGAA
CGACAGTCTA TTCTCTTTCG AGCAAGACGG CCGGTTTCTG GCTCAGCAGT CCGGGGTGTA
GGGGAACGTA ATCTTACAGT TAGTGTCGCA GTTCCCTCCA GCCCAAAATT ACACAAACCC
TTATTTACTT TTTAGAAATT TGCCACGAGT CGT
|
|---|
| Protein sequence | MTGCSGAGKT TIATALEDQL VKSYGKHVYR LDGDNLRTGL NRDLGFSEAD RAESVRRTGE
LATLFADAGV VTLVGLISPY RKDRDAVRKR HVDQGIPFYE VFLDVPVDEL KKRDPKGQYA
RVESGELKHF TCIDDPYDEP LQPEITLKTH ELTIEQSVQI LFRRLERDGI LVGAPKLSPP
GLPNPDGDVL VDLHVPDESK EARRAEAATL PKVLINDIDL NWLQTIGEGW ASPLRGFMRE
GTLLETLHFN SILTDPFNLT GNALRLETRT NFDHFSAHPA PQRVSMPIPI TLSCTSFTKD
LIDASSHNAV ALVTQMGHTV AILRDPEVYA NRKEEIVTRM YGVVDPDHPY IQHIYRGGDY
LIGGEIELLD RIRYNDGLDQ WRKTATELVQ EFQSKGADTV YAFQTRNPTH AGHAYLMRSA
GEDLRRQGYQ KPVLWLSPLG GWTKADDVPL DVRVKQHEQV LQAGTTHPGG LDPESTVMAI
WPAPMVYAGP TEVQFHAKSR RSAGASYFVV GRDPAGMKGS PNAVAHPDDD LYDGNHGRYV
LQNSPGLGDM KMLSFVKVMY DTTDNIMKIP DEARLADFIS ISGSKMRLLA RNGATPCSPT
NIPTDLVEAN CVPSGFMVPD GWNQVVDYYR NIDDVQRWTP WSQPRVDPPT APRTTYQGQF
GSRSFHLTST EYESFWHDIP LSPSGQSETV VNMVTEIPMY CTAKMEIQKM LSNSPIAQDT
NSDGSPRHYS YGTPFFNYGL IPQTWEDPNL KSAQGYGGDN DPLDVIELGS SPLQMGGLTP
CRVLGSFELI DEGETDHKIL CIAVDDKDAN QIHSLEDLER VKPGHLDKLR DWLKRYKTSE
GKAENNLASE TPRTAMEAVG VIQETHGRWR SLCGKDGTTV YSLSSKTAGF WLSSPGCRGT
|
|---|
| |