| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_19579 |
|---|
| Symbol | |
|---|
| ID | 7200170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011674 |
|---|
| Strand | + |
|---|
| Start bp | 156373 |
|---|
| End bp | 159094 |
|---|
| Gene Length | 2722 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179144 |
|---|
| Protein GI | 219116699 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.162822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGCGTGACAT CCAGTAGCTA CCGTGCACAA ACAGGATATT TAGCTTATTG AAGACCACTT
TCCTTGTTGT CGACCAGTCT GTAGATCGTA GGCAGCGAGG CAGCAGATAC TTTGTAGTAA
AGCTTCGTCT GGTCTCTCGA GCATGCCGAC GACGGTCCCG AGTCTGGCGG CAACTTTTCT
CACAATGGTA CTGCTGACGC CTTGGTCGAA TGGACTGTGG CGAGGCGGGC GACGATACGC
CTCCTCGGCC ACGGCGTTTC GAACGACTAC TCTCGCACGG CATTTCGCGG TACTCTCCTG
GTCACCAACG CAATATCCGT GGCGTCCCCG CTTAAACGTC GGGACAAAAG CGGAGCCCAC
CGGGAGGACA CTACGGTACG CCACCACCAG CAGTAGCAGC AGCAGTACTA ACGATAGCGC
GTCGGAATAC GACGTGATTG TGGTGGGTGG CGGGCACGCG GGTTGCGATG CGGCAGCTGC
TGCTGCTCGG ACCGGAGCCC GGACGGCCCT GGTCACGCAA AAGCTCGCCA CGATCGGCGA
ACTTTCCTGC AATCCATCAA TCGGTGGTAT CGGTAAGGGT CACTTAGTAC GGGAGATTGA
CGCACTGGAC GGACTCATGG GAAATGTGGC AGACCAGGGA GGCATTCATT TTCGACTCCT
TAACCGACGC AAGGGTCCAG CCGTCCGGGG ACCGCGAGCA CAGATGGATA GGGATCTGTA
CCAGCAGTGC ATGCAGGATA TCTTACGCAA CTACCCAAAC CTTCATTTGG TCGAAGCATC
GGTACAGGAT TTGCTGTTGG ACCAAAGCAC CTCCGCGCCA TTGGAATCAA TGGCACCGAT
GCAGTCGGGA GATCTCGGTC AGGGTTTGTT GGGCAGTACG GGTCGGGGTT CCAGTCCGGT
GGACAACGGG GCCAATGTCG ACCAGCAAGC GCGCATGATA CAAGCCGCCA CGTCTTCATC
GCGGAATGCA CGTATTCGGG GAATCGTTGC GGAAACCCCG GATGGTAAAA CCATCGAGTT
GGCGTCCCGA GCCGTCGTTA TCACCACCGG TACCTTTCTC CGCGGTGTGC TCATGATGGG
ACACGAACGG TACAGTGGTG GTCGGCATTT GCGAGATTCA GAAGAGGTAG AACCACCCTC
GGTCGGCTTG GCCCAAACCT TGGCCCGTTT TGAATTTCCC TTGGGACGGC TCAAGACCGG
AACTCCCGCA CGGATCGATG GCTCTACAAT TGATTGGAGC GCACTCGCCA TCCAACCGTC
GGAGAATCCG GCACAACCTT TTTCGCATTT GCGGCAATTT AACGAAGAAC AACCTCCGTT
GGTCGAGGCT GGGACATTAA TTGACTGCTA CCAAACTGCG ACGAATGAAG AAACACACAA
ACTAGTCATG GAGTTTGAAC ACATGCTGCC GCAATACGAC GGCTTGGACG GCAAGGGCAA
CGGTCCTCGC TACTGCCCCA GCATCTACAA GAAAGTCCAG CGGTTTCCGC AACGGACCGG
CCACAATTGC TTTTTGGAAC CCGAAGGACT GAATACGGAC CTGGTGTACC CTAACGGCAT
GAGCGGTCCC TACCCGCCTG AAATTCAGCA GAAAATATTG CGTACCATGA AGGGTCTCGG
CGCCGTCGAA ATTATTCGAC CAGGCTATGA TGTGGAATAC GATTTTGTCA ATCCTACAGC
CTTGACCCAC ACCCTGGAAA CGAAACGAAT CGGTGGTTTG TACCTGGCGG GTCAAATTTG
CGGTACCACG GGCTACGAAG AAGCCGCCGC CCAAGGCATT GTGGCCGGTG CCAACGCCGG
TCGTGCGGCG GCTGCTGCCA CCCGCGGTGA CCCACCGCCC CTGCCCTTTG TGATTGGGCG
AGACGAAGGA TACATTGGTG TGCTCGTTGA CGATCTCGTC ACGAGGGGGA CATCAGAGCC
GTATCGCATG TTCACCTCGC GCGCTGAATA CCGAATTAGT TTGCGAGCGG ACAATGCAGA
TTTGCGGCTG ACCCGCAAGG GGATGGAGTA CGGATTGGTG AAGGACGAAG AGCGTATGTC
GGCATTAGAT GCCCGGGAGT TTCTGATTGA CGATCGGGTT GGCAAACTAT CTAGTTTTCA
GCTGAAAGTG ACGGAGTGGT CGTCACGAGG CGGATTGGAC CTCATGGGTG GCGCGCAAAT
GAAACGCAAA ATAGGACAAA AGAAAACTGC GGAAGAAGTA CTAGGTATGC CAAACGTAAC
GCTAAAGGAC GTGGAAGATA TCATGAAGGC AGTCAGTAAA GAACCGGATG TTGTGGTCGA
AACGACCGAT CCCCTCCCAA GTAAGGAAGT CCGGGCTATG TTGGAGGCAA TGGACAATTT
TGTACCGTCA CCGGCATCGG TTTACGACAC AGTCGAAGCA TCTGTAAAGT ATCAATCCTA
CGTGCGGCGA CAACACAAGG ACATGGAAAG TTGGAGACGA GCACAAGGAT TACGGATTCC
CCCCGACGTG GAATACGTTC ATAAGTATCT GCCCACGTTG AGCATCGAGG AGCTGGAAAA
GCTAAGCCAA ATTCGACCCG CTACCTTTGC GGACGCTTCC CAAATCAGCG GCATGACGCC
AAAAAGTCTT ATTTACCTAT ACCACCATGT CCAAAGACGA AACCGCGATC GCGATGGAGG
AGGCTCCAAG AAACGAAAAG TGGCCGAGTC GTGAAGAAAG AAAATGATTT TTACCTTTGT
TATAGACTTT GTGTATGCGT TT
|
|---|
| Protein sequence | MPTTVPSLAA TFLTMVLLTP WSNGLWRGGR RYASSATAFR TTTLARHFAV LSWSPTQYPW
RPRLNVGTKA EPTGRTLRYA TTSSSSSSTN DSASEYDVIV VGGGHAGCDA AAAAARTGAR
TALVTQKLAT IGELSCNPSI GGIGKGHLVR EIDALDGLMG NVADQGGIHF RLLNRRKGPA
VRGPRAQMDR DLYQQCMQDI LRNYPNLHLV EASVQDLLLD QSTSAPLESM APMQSGDLGQ
GLLGSTGRGS SPVDNGANVD QQARMIQAAT SSSRNARIRG IVAETPDGKT IELASRAVVI
TTGTFLRGVL MMGHERYSGG RHLRDSEEVE PPSVGLAQTL ARFEFPLGRL KTGTPARIDG
STIDWSALAI QPSENPAQPF SHLRQFNEEQ PPLVEAGTLI DCYQTATNEE THKLVMEFEH
MLPQYDGLDG KGNGPRYCPS IYKKVQRFPQ RTGHNCFLEP EGLNTDLVYP NGMSGPYPPE
IQQKILRTMK GLGAVEIIRP GYDVEYDFVN PTALTHTLET KRIGGLYLAG QICGTTGYEE
AAAQGIVAGA NAGRAAAAAT RGDPPPLPFV IGRDEGYIGV LVDDLVTRGT SEPYRMFTSR
AEYRISLRAD NADLRLTRKG MEYGLVKDEE RMSALDAREF LIDDRVGKLS SFQLKVTEWS
SRGGLDLMGG AQMKRKIGQK KTAEEVLGMP NVTLKDVEDI MKAVSKEPDV VVETTDPLPS
KEVRAMLEAM DNFVPSPASV YDTVEASVKY QSYVRRQHKD MESWRRAQGL RIPPDVEYVH
KYLPTLSIEE LEKLSQIRPA TFADASQISG MTPKSLIYLY HHVQRRNRDR DGGGSKKRKV
AES
|
|---|
| |