| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44955 |
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| Symbol | HDS |
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| ID | 7199630 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011673 |
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| Strand | - |
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| Start bp | 765110 |
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| End bp | 767756 |
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| Gene Length | 2647 bp |
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| Protein Length | 757 aa |
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| Translation table | |
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| GC content | 52% |
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| IMG OID | |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase |
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| Protein accession | XP_002179061 |
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| Protein GI | 219116532 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.066263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TCAAAAAATC ACGTTGAACG GAGTTTTCGG AGCTTCTTTG TTTGTAGGCT CGTATCGGTT
TTGCTTTCTA GACAGGAAGG CGCTATGAAG TTCCTGGGTC TTACAGCGAT AATGCTGACG
GGCTTGGCGA CCTCTCCTGT GCAAGCTTTT GTTCCTCGTA TGGCATCCTT TGGTCGACTC
CAAACGACCG CTTCCATGGT AGGTCTTTCC AATAGGATCT ATTGTTGCAC ACTCTGGGCT
AGCAATAATA TTTCCTCAGC TTGAATACCA AGGTTCACAG TCCGTTGTTT TGGTCGGAAA
AGAAAGAGTG CTTACGTGAA GTAAATCCGA GTGACTTTAA TCTTTCGTCG GAATGATTGC
GACACCACTT TGACGATTCT CAAACTGTTT CCTTTTCTTT TGTCTGGCAG TCCTCCACGA
AAGAACCCTT GACGGTGCAA GATGTTCTTT GGACTCCCGC TATCAAGTCC GGCAAACGGG
ACGAGATTTA CGGTCCCATC CAAAAGTACT GCGAGGACTT GTACGAGGTG ACCCGCCGCA
AGACTCGTAC CGTAAACTGT GGCCCGATCA AATTTGGTTC GGACCATCCA ATTGTCCGCC
AAACCATGGC GACGACCAAT ACTGCTGATG TTGAAGCGAC CATGGACCAA GTCATGCGGT
GTGCGGATAA AGGCTTTGAT CTGGTACGCG TTACGGTGCA GGGAAAACGG GAAGCCAACG
CGTGTGCCAA GATTCGCGAA GGATTGTTCA AAAAAGGATA CGACATCCCG CTCTGCGCCG
ATATGCACTT TCAACCCGTC GTCGCCTTGC TAGTAGCGGA TGCGGTGGAA AAAATTCGGA
TTAATCCGGG AAACTTTGCG GACGGGCGGA AGGATTTCAA CGAAAAGGTC TACGAAACAG
AAGAAGACTA TTACGCGGAA CGTGGCTACT TGGTCGAAGC CTTACAGCCT TTGGTAGAAA
AGTGCAAAGA TTTGGATCGC TGTATGCGTA TTGGTACTAA TCATGGATCT TTGTCATCCC
GCGTTCTTTC CTTTTACGGT GATACGCCCC GTGGTATGGT GGAATCAGCC ATCGAATTTG
CCGACATTTG CCGCAGCTTG GATTACCACA ACTTTGTGTT CTCCATGAAG GCTAGCAACC
CACTCGTCAT GGTACAGAGT TACCGTTTGC TAGCGGCCGA GCAGTACCGC CTGGACTGGG
ACTACCCCCT ACATTTGGGT GTGACCGAAG CCGGTGAGGG TGAAGACGGC CGCATGAAAT
CGGCGATTGG TATCGGAACT TTGCTCGCGG ACGGCCTCGG TGACACGGTT CGCGTATCTC
TGACGGAAGA TCCCGAATTT GAATACGACC CTTGCAATCG ATTGGCGGAG ATAGCCGAAG
GTCGGTTGGC CGCGAACAAC GCCGAAGCCA AGGCCCGACA GGCGGCCGTC CAGACTTACA
AGGATACTCG TGATATCACC ACGTTTGCCC GGCGACAGGG TGCCTTGCCA GCGAAAGACG
AGGGCGACGC CGTTGATTGC AGCGGATTTC TTAATACGGC CGGTTCGGTT ATTTCTCCGG
TGACGCCAGA AATGCTCAAA GGAAGCAGCG CGCAGTATTT GTACCAAGAC CTGGGATGCA
AGACGGCCGT CGGTATGCCC TTCAAGGATG TGGCAACGAC AGATTCGATC TTTATGCGTA
CTGTCCCCCC GAGTTCGGAT ACGGAGTCCC GAACGGCTTT GCGTCGCTTG ATAGAGGTGA
ACATGGGTGT GGTTGTTCCG GCGGAAGTGC TCGAAAAGGA CCCTTTGCCC AACGCGGTGG
CCTTGATGGA CCTGACGGAC GCGATTGCCA AGGGTGGAAA GGTAAGACTT TTGCAGAGAA
TGTCATTTTG TTGTCGTCAA AATCGTCTCT AATGCACTCT TTTCTTCTTC TGGCAAAGCT
CCCGGAAGGT GCTATTCGAT TGGCTGTCAC CATTGACGGA TCAGAAGACG ACGAGACAAT
CGCCAAGGTC AAAGACTTGC AGCCGGCGTT TGCATTCCTC AAGCCGAAAT CGGAATTGTC
CCATCTACAC TCGGCTCGCC GTGTGTTTGA ACTTTTCAAA AGCAATGATA TCGAAACAGC
GGTTATACAC CATTTCGAAT CCAACACGAA TGACGCCAAC GAACTCGCCC TGCAGGTCGG
AACTAAAATT GGTTCGCTCT TGACGGACGG CAACGGTGAC GGTATCATGA TTGAACAGGT
TGGGGAGGAG AAGCCGTTTT CGGTAGATTT TTTGCGACGA ACGTCATTCA GTTTGCTACA
GGGAAGTCGC ATGCGCAACA CGAAGACAGA ATTTGTTTCT TGTCCGTCCT GCGGCCGAAC
GTTGTTCGAC TTACAAGAAA CGACGGCTGG TATCCAAGAG GCAACGGGAC ACTTGCCTGG
TGTGACGGTG GCCGTCATGG GATGCATCGT GAACGGACCT GGCGAAATGG CGGATGCTGA
CTTTGGATAC GTGGGCACGC TCCCCGGCAA AGTGGACTTG TACTACGGTA AGGAAGTGGT
TCGCAAAAGC GTTCCCAACG CCGAAGCCGT GGATGCCTTG ATTGACCTTA TCAAGGAATA
CGGCATGTGG AAGGATAAGG AAGAAGCAGA AGAGGATACG GAAGAAGTCG CCGTCGCCGT
TGCGTAA
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| Protein sequence | MKFLGLTAIM LTGLATSPVQ AFVPRMASFG RLQTTASMSS TKEPLTVQDV LWTPAIKSGK
RDEIYGPIQK YCEDLYEVTR RKTRTVNCGP IKFGSDHPIV RQTMATTNTA DVEATMDQVM
RCADKGFDLV RVTVQGKREA NACAKIREGL FKKGYDIPLC ADMHFQPVVA LLVADAVEKI
RINPGNFADG RKDFNEKVYE TEEDYYAERG YLVEALQPLV EKCKDLDRCM RIGTNHGSLS
SRVLSFYGDT PRGMVESAIE FADICRSLDY HNFVFSMKAS NPLVMVQSYR LLAAEQYRLD
WDYPLHLGVT EAGEGEDGRM KSAIGIGTLL ADGLGDTVRV SLTEDPEFEY DPCNRLAEIA
EGRLAANNAE AKARQAAVQT YKDTRDITTF ARRQGALPAK DEGDAVDCSG FLNTAGSVIS
PVTPEMLKGS SAQYLYQDLG CKTAVGMPFK DVATTDSIFM RTVPPSSDTE SRTALRRLIE
VNMGVVVPAE VLEKDPLPNA VALMDLTDAI AKGGKLPEGA IRLAVTIDGS EDDETIAKVK
DLQPAFAFLK PKSELSHLHS ARRVFELFKS NDIETAVIHH FESNTNDANE LALQVGTKIG
SLLTDGNGDG IMIEQVGEEK PFSVDFLRRT SFSLLQGSRM RNTKTEFVSC PSCGRTLFDL
QETTAGIQEA TGHLPGVTVA VMGCIVNGPG EMADADFGYV GTLPGKVDLY YGKEVVRKSV
PNAEAVDALI DLIKEYGMWK DKEEAEEDTE EVAVAVA
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