Gene PHATRDRAFT_44788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_44788 
Symbol 
ID7199747 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011673 
Strand
Start bp245866 
End bp249198 
Gene Length3333 bp 
Protein Length967 aa 
Translation table 
GC content47% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002178733 
Protein GI219115876 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CAACCGTGAA GCAAAAAGTC TCATACTTCT TACAACGCCT GATCCAATTG TCGCTTCAAG 
CCCATCCGTG AATAGAAACA AATATAAATT GCATCCTTTG CTTTCCATCA ACTCCCCATG
ACTGGCGATG ACACCACAAC GACTCCTCCG GTTGTCCCAC GCGAAGCCGT GCGACCCGTA
TCATCCACAG AGAACGCGGG GAACTATCGT CCGCGCTCCC GGCAAAACAG TCGCACACGT
CAAAACAGCC GGGATGAAAT GATCACGTTC AATCCAACAA CGGCCGCTAG TATGAACAAT
CGCCGGGTGC TCTTTTCGGA AGCCGCACGT CGTGATGGAG GCGACAATAA TGTTGCCGCT
CCGGAAATGA TGGGACCAAT TTTGCGACGC AAAAAGGTCG TGTCCATGCC GCTTGGTGCG
GGAGGTAGGT CAACCTGACT TCGAGGAGAG AACGGTAAAA ACCAAATGCT TTTTGGTTGT
CTAACGGCAC ACCATGGCCT TCTGCATTGC AATTCACAGG AGATTTCTTT GTGAGCAACG
ATGTCGGAGG TCCACATCGA CAAATGCTGG CTCAGTACAA AGGCGTACAC GGGGACAAGA
CTACTTTCAA GGGTCGTACG AAGCAAAAGA GCGTCGGCGC CGCTTTTGTA ACACCTGCGG
ATCCGGACCC AACTACTGTT ACTTTGCCAC AAGCTCGTAT CCGCCAAGAC AGCGGTACTC
GTCGGGATTT GAGCCACGTG ATTAAAGGTG TTCTCCGACG GAAACAAGTC AGTTTGGACT
TGCTTGGTCC CAATGACTTT TTTGCACTAC CGACGGATGA ACCAGAAGAA ATGGTGTTAT
TGCCAATAAT GCCCGAAGAC GACACAGCAC AACTGGACGA CGAGCAAGGT AGTATGACGA
CGGAGAAGCG TCTATTTCGT CCTTTGCGGT TTGCCCCTCG TATTGGTGTG CGCGGTAATC
GTGGTGGCGG ATACGGAGTT GGACACGCCG TAGAAGCGGC TCCAGAAACA ATTCCTGAAG
AAGCAGTCGA CGAAGAGATG GTAGATGCTT TTCACCGATA CTCCAAAACA AACCAGGACT
TGAGGCTACA AGTTATTTCA CTCAAAAACA AACTTGCCAC CAAAAGCGAT TGCTCGGCGC
TTATGGAAGA GGCCGACAGT ATTTTGCGAA CGCATTCAGA GCTCAACCCG GATGAACAGC
TCCTCAAAAG GAAGATCATG AAGGTTCAGG GGTCAATTGA TGAAGAGCAT GAATGCAGCG
AAGGCATTGA CAACAACATT AAAGACCTTG ACAATTTGGG AATTATTCGG GCTACTCGTC
GCGATTACAT CAAAACCGGC ATTTTGTTTA TGATTATGGT TGCCTTGACC ATCACAGTCT
CAACCTGGGA GACTCACTTG GACGAAGAGA GCTTCATTTT CCGGCACGTC GGTTTAGCCT
GCGTCACGGA ATGCCGTGGA AACTTGCTTA CACGTGATTT CTTTCACGGC CACAACCAAT
TCAACGACGG AGATGTCATT GAGTTAATCA TGCACATGGA TCCAAATTCA CTTGCCGAAA
CAATGGGAGC GTTGGCATTA GTACAGATTG TGGGAACGGA AACTAATGAA ACAAAAGCAA
TGACGACTTT CGGACCGACC GCGGAAAACG ACCGTGAAAC CTATGATCAT CGTCTGGTGG
TAAATTTTGA CCGCCCGCAT GAGCCGCATA TTATTGTTGT GAACAGTACC AAGCCCAATT
TTGAGTTGTC GTTTACTTTG ACGGCGCGCC TACTGGCTCC GTTGGCTGAC AACAGTGTTG
CAATTGCAGC AGTGATTATG GTGGTTGTGT ACCTTTTTAT TCTGCTGGAA GTGATCCACC
GTACGCTAGT CGCTATTTTT GGCTCTATGG TGGCCCTGAT GTTTCTCTTT GTGATGCAAA
ATGGCGAAAC GGAAAGCATT CGTCAAATTA TGTTGAACTT AGAATGGTCT ACGCTGGGTC
TTTTGTTTGG AATGATGCTC ATTGTTGGTG AGCTTTCTCA TACAGGAGTG TTTGAGTGGT
GTGCTGTCCG TTTGCTCATG GCAAGCAACG GATCATTTAC TCGCTTGATT GTGTTGCTTT
GTGCTCTAAC CGCAGTAGCC AGTGCCTTTT TGGATAATGT GACCACTATG CTTCTGGTTG
CACCAGTGAC GATTGACATG TGCAATATTT TGGGTGTTGA TCCTCGACCA TATTTGATTG
GGGAGGTGCT GCTTAGCAAT ATAGGCGGAA CAGCAACATT AATTGGTACG TTACGTGATC
AAACAGAATA GATGCAATGT TTCATTCTAC TTACCCCCGG GCACCTTTTG TGTACAGGTG
ACCCTCCAAA CATTATCATT GGAAGTTCGT TTGACGAAAT TGGCTTTGTT GATTTTATCG
TGAATGTACT TCCTTGCATT TTTCTTCTTT GCATCCCAGT CTCTCTTGGG CTGGTGGTTT
GGGTTTACCG GTACTATCTC ACTACAAGCA CCATGAAAGT CCTAGATACA GCGAAACTCA
AGACTGCTTA TCCAATCTAT GATGAGCCTC GCCTTATGAT TGCTGGCACC GTTACTGCTT
TTGTAATCAT AATGTTTTTC CTGCATCCGG TACATCACAA AGACACTGCG TGGATTGCCC
TCCTTGGAGC GTTTATTACT ATTGCATTCA CCAATCCACA CGACGTGCAA GATGCGGTAT
GTCCAGGGTA CTTAACGGAG TTTTTTGGGA TGGATTTCTC ACAGCATTCC CCATCTCCTT
TCTTTTAGCT CCGAAACCAT GTTGAGTGGG ACACCCTTCT ATTTTTTGCG GGATTGTTTG
TTTTAGTCGA GGCATGTGCA GCAATGGGCT TACTCGAGGA AATTGGAAAC TTGCTTGGTG
ACTACATTCA GGCACAGGAA GAGAGCAAAC AGCTTACGCT GGCAATAACA TTACTTATGT
GGGTCAGTGC GATAACGTCG GCATTTCTCG ATAACATTCC TTACACGGCG ACGTTGATAC
CAGTGATTCA GATCCTTGCT GATAGTCTAC CTGATACGTT GCCAATCGAA ATATTAGCGT
GGGCTCTTTC CTTTGGTGCC TGTCTAGGAG GCAATGGTAC TCTCTTAGGA GCAAGCGCCA
ACATTGTGAC GGCAGGAATT TCAACAAACA AAGGATTTGA GATCTCTTTT TTAAACTTCC
TTTATCCTGG TATGCTTTTC ATGATTGTAA CAGTGGCAAT ATCAAACCTG TATATGTTGG
TGCGATACTC ATGGATCTAA GAGAAGGATG GTAAGCCGAC AACAATCCTC GTCTCTAAAT
ACAACTAATT TAAAGACGCA TAACGCGCTG TCA
 
Protein sequence
MTGDDTTTTP PVVPREAVRP VSSTENAGNY RPRSRQNSRT RQNSRDEMIT FNPTTAASMN 
NRRVLFSEAA RRDGGDNNVA APEMMGPILR RKKVVSMPLG AGGDFFVSND VGGPHRQMLA
QYKGVHGDKT TFKGRTKQKS VGAAFVTPAD PDPTTVTLPQ ARIRQDSGTR RDLSHVIKGV
LRRKQVSLDL LGPNDFFALP TDEPEEMVLL PIMPEDDTAQ LDDEQGSMTT EKRLFRPLRF
APRIGVRGNR GGGYGVGHAV EAAPETIPEE AVDEEMVDAF HRYSKTNQDL RLQVISLKNK
LATKSDCSAL MEEADSILRT HSELNPDEQL LKRKIMKVQG SIDEEHECSE GIDNNIKDLD
NLGIIRATRR DYIKTGILFM IMVALTITVS TWETHLDEES FIFRHVGLAC VTECRGNLLT
RDFFHGHNQF NDGDVIELIM HMDPNSLAET MGALALVQIV GTETNETKAM TTFGPTAEND
RETYDHRLVV NFDRPHEPHI IVVNSTKPNF ELSFTLTARL LAPLADNSVA IAAVIMVVVY
LFILLEVIHR TLVAIFGSMV ALMFLFVMQN GETESIRQIM LNLEWSTLGL LFGMMLIVGE
LSHTGVFEWC AVRLLMASNG SFTRLIVLLC ALTAVASAFL DNVTTMLLVA PVTIDMCNIL
GVDPRPYLIG EVLLSNIGGT ATLIGDPPNI IIGSSFDEIG FVDFIVNVLP CIFLLCIPVS
LGLVVWVYRY YLTTSTMKVL DTAKLKTAYP IYDEPRLMIA GTVTAFVIIM FFLHPVHHKD
TAWIALLGAF ITIAFTNPHD VQDALRNHVE WDTLLFFAGL FVLVEACAAM GLLEEIGNLL
GDYIQAQEES KQLTLAITLL MWVSAITSAF LDNIPYTATL IPVIQILADS LPDTLPIEIL
AWALSFGACL GGNGTLLGAS ANIVTAGIST NKGFEISFLN FLYPGMLFMI VTVAISNLYM
LVRYSWI