| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44767 |
|---|
| Symbol | |
|---|
| ID | 7199884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011673 |
|---|
| Strand | - |
|---|
| Start bp | 180714 |
|---|
| End bp | 185593 |
|---|
| Gene Length | 4880 bp |
|---|
| Protein Length | 1557 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178945 |
|---|
| Protein GI | 219116300 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TAAAGATGTA CTCACAGTAA ATTACGTTCG GCAGAGTCGA GGAATGCCTT TTCTATTGAG
CTGCTGCGAG AAGGTAAAGG ATGGACTCGA ATCAGGAAAT GGTGCATCGC AGACGCTTGG
CGCAAATTCT GCGCTACATT GCGAGTATGC ACACTGCGCT TAACGGAACC GTCGAAGGAG
CCGCCAGTGG GAATGCGTTT GTCCGCGACG GTTTGCGTCC CGGGGTGATC CCCTCCGACT
TTTTCCGGCG CGAACAACCG GAAGACGACC CCCATTGGGG CGTCTTATTT AGTACCGAGA
GCTTTCGTGC GCTACTGGCC ATCGAACAAG ACCAACAACC GAAACTCTTT GCTACACCGC
CGTTTACCTT TTACGCGGCT GTGGCAGGAT CCGGAATCGC TGCTTCTAGT TCCAAAATGT
GGGGGAGCAC CAGCGCGCAC AAGCGCTCCT TTACGGACGC TTTTCCGGCG CCCTTCAAGG
GTTCGCCTGT TGCCGTTCCC GAAAAAGCCT GTTGGCTACG TATCACGCGC TTGACGACTT
CCCAATTATT ACCTCCACCC CTACGAAAGC ACCCCGCCGT GCGCCAGTAT CTCCAGGATT
GGTGTACGTC GGACCCGACT ATGACTGGCG TAGACGATGT GTTGACCCTG CGTCGTTTGG
AACAAGCACC CAAAATCGCG CCGACGGTCG ATTTGCAAAG TCGGGATGCA ATCAAGTCCT
TTCTCCGCCG CACCAAAAGG TACTTGCGTC AAAAGTCATA CCAGAATACA CTCGAACCTC
TCTACAACCG CTTATTCGAA TGGCAGCAGC AAAATGACCA GGACGAATTA GTTTGGGGAC
TTGGGCACGC CAAAGTACGT GCCATCGACG GGGTCTGGAT CAATGGACCC CTGCTGGAAG
TCCAGATGGA AGTCGAACTC GCTCGGGACG GTGCTTTGCT TGTACGACCA CGGGAACACA
CTGGTGTATC ATTAAATCGC GATGTATTGG CGGCGCTTGG TACCTGGTCG GGGGAAGCGT
TGTCTCACGT GGTGCTCTCA CAACTTCACC GGACCGTAGC TGAGCTCGAA TCGTGTCAGC
TGTCGCCAGC GCAGCCCAAC ACTTACACTC CACTTCTTAA GCGTATGGCG GTGGAGCTGT
CATCGGGTGG ATCCTTTCAA TCATCGTCAG TGGCAGCAAC AACAACGGCA CAACGTGATC
CTGAAAAATT GGTGGTGACG GAAGCATGGT GTGTCTTTGC GCGCCCCAAA CCCAGCTCCG
TTTGGGCTCG GGACGCCAAC ACGTTTGCCG ACCAAATAAT GCAGGGTTTG GAAAACCCTT
TGGCATCCGT CGAATTACCA AAGGCGTCCT GGTCGTTGAC GCTCGGCCCG GGATCCTTGG
ATACAGTTTT GTCTAGGCAA CAAAGCACCA ATTCAAAACG GTCGCGCCCT TGGGTGCGCT
GGATTTCGGA AAAGGTTCTC GGTGTTCGAA AGTCGCCACC GGAGGAAAAA TCGGCAAGGC
CTCTGTTCCC ACTTCCTACG TCTGATGCTC AAAACAAAAT CGCTGAATTG CTTTTGACCA
AGAATTACCC AGCGGTCGTT TGCGAAGGTC CGCCTGGGAC AGGAAAGTCA CACTCCATTG
CCAATTTGAT ATGCGCCTAC CTCTGTCAAG GCAAACGAGT CTTGGTAACC TCCAAGAAGG
CACCAGCCTT GTCGGTTCTG CGGAACCGAC TCCCTGTGAC GGTACAGGAA TTGTGCGTGG
ATGTATCGCG TAGTGAACTG GCGGGAATGC AACAATTGCA GCAAACCGTG GAACGCCTCG
CCAATCGTGT TGCTAGCGCT AGTGCTGTCT TGGAAGCCGA AAAGTGCAAA TTTCTTCAGG
TAGGTACAAA CTCCATGCTT TCTGCCCCTG AGTTCTGGTT CACGTCAACG TTTGTCTGCT
AACCTTTTGG ATTGCTTGCT CATTGAATTA GCGAAACATT GACGAACACG AGGCCCAGCT
CAAGGAGATC GATGCTAAGC TTGTGGCACG GAGCGAAAAG GTTCGAAAGT TAATGGATCA
TCCCAAGGGG CAAAGCCTCG TTGAAATCTC TATGGCGATC ATTGATAGTG CCCCGTGGCT
TGCCCGAACA ATAAGTGGAT GGACAGTAAA GGAAGTGAGC GCTCTCCGGG ATGTAGTTGT
GTCACTTTTA CTCAAAGAGG GAGATCCAGC GCGTTCCGTG TCAGGTTTTT CGAGACCACC
AACCAACGCA CTAATATCTA GAGTCGCTGC GGAAGCTGGA CATGCATTTC CTTTGATATC
CAACGCTGTA AAAGGGGTGG CGGCGCGTAT TCCCATGGTT GGGTCGTTGA CTGGAATTGA
ACAGCGGCGA ATGAGTGTGG AAGAAGCGCT GATGCAAATC CGAATAAACG GCCAGCGACC
CTCTCTTGCA GCTGAGTGGC ATACCGTCCT TCGTGCTCTC AATCACGCTA AGGCATTGCA
TTCCTTCGAG ACAATTACAT GGAGGACTCA CGAATCAGAG AACGCATGGC CACACTATGA
ATTTGCCGAT AACATCGATG AACTCTTCCA GCTCAAAGCT ACATTCGATG ATGCTGTCGC
CATGAAATCG CTTGCTTGGA ATTTGGATCT GGAAGATGAA ACAAATATGG CCGTTGAGTG
CCGAGCACTC GATACAAAAC GTCGGATGAT TGCGACTCGG ATCTTGGGCC TTGCCGAGGA
CCTCGTGGAC GCATCTGTCA TTACTGAGTT GAGTCGGTCA TTTTCTACGG ACGCTCAATC
GGCTCTCATT CGTTTTGCAC AAATCGCGGG AAAGGCAAAG TTCAGTAGGA CTTCGCAGCC
TTCAAAAATG ACGCAACGAC AGAGGCGCCG TCGACAAGAG TATCTCGATG CCTTCGATCG
ATGCTGTCGC TTCATTCCGT GTTGGATTCT CACCGCTTCG CAGATAAGCG ACTATCTTCC
GTCGGAATGT TTGTTCGATT TAGTTATTAT AGATGAGGCG TCACAAAGCG ATATTAGAGT
TCTACCGGGC ATGTTGCGGG GTAAACAGTG GTTGATTGTC GGTGACGGGA AACAAGTTAG
TCCGACAGAA GCGTTCGTAT CGGAAGAACA GATCGATGCA TTGCGAGCGG CACTTCCGCC
GTCGCCATTG GAGGATTCGC TACTGCCTGG TCAAAGCTTT TTTGATTTAT GCGCCCAAGC
GTTTCCACAA GGGAGAGTCG TCTTGAGTGA GCACTTCCGA TGTGCAGAAG AAATTATTGA
TTTTAGCAAC CAGCAGTTCT ATGACGGTAG GCTTGTTCCC CTAAGACTTC CAACGAAATC
TGAACGACTC ACGCCATCTC TTGTCGATGT CATGCTACGC GATGGTGTAA AGATTGGCAA
AGTCAACGAA AAGGAAGCTG ACGAAATTGT CCGCATGATA CAGGACTTTA CTTCAGATCT
ATTACAAGTC GCAAAGCCGC GATCAATCGG CGTGATCTCC CTTATTGGGG ACGAACAAAG
CCGCCTTATA CGCGGTAGAC TTCTGGATAC CATTGGACCT CGTCTTATGG CTAGACACGA
CATTCTAGTT GGCGACCCTC CGACGTTTCA AGGTGCTGAG CGAGACATTA TCTTCTTGAG
TATGGTATGC TCTCGAGGTG CCATTCCGAC ACAGAATCAG CTTATGCATG TGCAGAGGGC
AAATGTTGCA ATGTCTAGAG CAAAAGACCG TTGCGTTTTG GTTCGGAGCG TAAATATCCA
CGAAATACCA AGTTCATTAG ACGTGAAAGT TCCAATCATA GAGTTCTTTC AACGAAGTGC
AGCTAATTTT GAGAATAGAC ACGGGCTTGA TGAGATTGCA GTTGAGTGTC CACAGCAAAA
GGGAGCCCTA TCAATCCGAT TATTACTTAC AAAACTTTTG AAAGAGCGGG GATTTACCGT
CCGAGACATG GGCATCGTTT GGAAAGAAGG CCTATGTGTG GAGCATCCGG CTTCTGATCG
ACGCGCTGCG CTACTGGTCG ATTGCGCAGG AGAGCCGCTG CGAGAGTGGC TAGCAAGCTA
TAGCCAAGAG AAGGCTATCC AGCGAGTTGG TTGGGTGTGC TTACGTGTCG ACGCTTTGTC
GTTTCTCCAC GATTTTCATG CCGCATTTCA GACAGTAGTC AAGTTTTTGT CGAGTGTTGG
GATCGAGGAA TCCGCTATAC TGTACGACGA GCTCGACGAC GACCAAGATG AAAGTATGGC
GCCGGAGGCT TTTGTTCAGA TCGAGGTGGA AGATCCTTCA GACGACGACT CGGAGAATCT
TCATGAAAAT ATCGATCTGG AAGCCGCTGG AAACCAAATG CACGACGTTG TAATGATAAG
CAGTGACGAA GAGGATACCG AGGTGACGGC AAAGAAACCT GCCGCAGTGA AAGCGGAGCG
TGTAGCAAGC GAGTCTTTGG AGATCGTAGA CAACGAGGAA GTAGATCCAT CCGATTTTGG
GCAAGTAGTG GACATTTCCT TTCTGCGGGG CGCGTCCATG TCCAAAGACG GCGACGATGA
TGAAAATAAT GATTTTAATC TGAGTGTAGG ATCTGAAACG GAGGTAGAAA GAAAAAACGA
AGAAAAAAAT GTTGCTCGCC GACCAAGCCA CAAGTCCAAC GAACTAAAAG ACGGCAAGGA
CAAAGACGAA GGTGACACCT TCACCTTGGC AGACAGAAAG GCTCAAAGCC GTGTGTCGAA
ACGGCGACGG TATCATCGAG TAGATAAATA CTCCCGAGAC GGACGTTGGT ATCCCGCACA
GCAGCATGAA GGAGAGCAGG ATGACGAACA TAAATGGTAC GATACCGACT CCGACATGTC
GGTCCACAAG GAGGATGCTT TGGTAAAAAA CAATACACAG ATGTAATGAT CGTGATTCCA
ATAAAATTTG TGCAACAACT
|
|---|
| Protein sequence | MDSNQEMVHR RRLAQILRYI ASMHTALNGT VEGAASGNAF VRDGLRPGVI PSDFFRREQP
EDDPHWGVLF STESFRALLA IEQDQQPKLF ATPPFTFYAA VAGSGIAASS SKMWGSTSAH
KRSFTDAFPA PFKGSPVAVP EKACWLRITR LTTSQLLPPP LRKHPAVRQY LQDWCTSDPT
MTGVDDVLTL RRLEQAPKIA PTVDLQSRDA IKSFLRRTKR YLRQKSYQNT LEPLYNRLFE
WQQQNDQDEL VWGLGHAKVR AIDGVWINGP LLEVQMEVEL ARDGALLVRP REHTGVSLNR
DVLAALGTWS GEALSHVVLS QLHRTVAELE SCQLSPAQPN TYTPLLKRMA VELSSGGSFQ
SSSVAATTTA QRDPEKLVVT EAWCVFARPK PSSVWARDAN TFADQIMQGL ENPLASVELP
KASWSLTLGP GSLDTVLSRQ QSTNSKRSRP WVRWISEKVL GVRKSPPEEK SARPLFPLPT
SDAQNKIAEL LLTKNYPAVV CEGPPGTGKS HSIANLICAY LCQGKRVLVT SKKAPALSVL
RNRLPVTVQE LCVDVSRSEL AGMQQLQQTV ERLANRVASA SAVLEAEKCK FLQRNIDEHE
AQLKEIDAKL VARSEKVRKL MDHPKGQSLV EISMAIIDSA PWLARTISGW TVKEVSALRD
VVVSLLLKEG DPARSVSGFS RPPTNALISR VAAEAGHAFP LISNAVKGVA ARIPMVGSLT
GIEQRRMSVE EALMQIRING QRPSLAAEWH TVLRALNHAK ALHSFETITW RTHESENAWP
HYEFADNIDE LFQLKATFDD AVAMKSLAWN LDLEDETNMA VECRALDTKR RMIATRILGL
AEDLVDASVI TELSRSFSTD AQSALIRFAQ IAGKAKFSRT SQPSKMTQRQ RRRRQEYLDA
FDRCCRFIPC WILTASQISD YLPSECLFDL VIIDEASQSD IRVLPGMLRG KQWLIVGDGK
QVSPTEAFVS EEQIDALRAA LPPSPLEDSL LPGQSFFDLC AQAFPQGRVV LSEHFRCAEE
IIDFSNQQFY DGRLVPLRLP TKSERLTPSL VDVMLRDGVK IGKVNEKEAD EIVRMIQDFT
SDLLQVAKPR SIGVISLIGD EQSRLIRGRL LDTIGPRLMA RHDILVGDPP TFQGAERDII
FLSMVCSRGA IPTQNQLMHV QRANVAMSRA KDRCVLVRSV NIHEIPSSLD VKVPIIEFFQ
RSAANFENRH GLDEIAVECP QQKGALSIRL LLTKLLKERG FTVRDMGIVW KEGLCVEHPA
SDRRAALLVD CAGEPLREWL ASYSQEKAIQ RVGWVCLRVD ALSFLHDFHA AFQTVVKFLS
SVGIEESAIL YDELDDDQDE SMAPEAFVQI EVEDPSDDDS ENLHENIDLE AAGNQMHDVV
MISSDEEDTE VTAKKPAAVK AERVASESLE IVDNEEVDPS DFGQVVDISF LRGASMSKDG
DDDENNDFNL SVGSETEVER KNEEKNVARR PSHKSNELKD GKDKDEGDTF TLADRKAQSR
VSKRRRYHRV DKYSRDGRWY PAQQHEGEQD DEHKWYDTDS DMSVHKEDAL VKNNTQM
|
|---|
| |