| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44694 |
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| Symbol | SMP1 |
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| ID | 7197898 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011672 |
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| Strand | + |
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| Start bp | 1285795 |
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| End bp | 1289470 |
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| Gene Length | 3676 bp |
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| Protein Length | 1028 aa |
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| Translation table | |
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| GC content | 51% |
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| IMG OID | |
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| Product | metalloprotease |
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| Protein accession | XP_002178401 |
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| Protein GI | 219115211 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ACCCGTCTCA CAATCTCTTT GTCCCGACAA ACCTCAACAC AAGAACGAAG CCTAAAATAT
CTCACAGTCA CCTGCCTTTC TCATGAAGTT TCCTTCGCAA CTCGGAGCCA CGGTCGCTTT
CGTCGTCGTT GCCGCAACGA CAACTAAAAC GGTGTCGGGC AATCTAGCCT CGCCGTTCCC
TTTCGAAGAA ACCAACGCTG ATGGAACCCC CACAGGTGAG ATGTACATCC ACGGAGGACC
TGGCGAAAGC TGGTTCGAAG ACAAGCAGGG ATTCACTATT TGTCCAGTGG ATGAGCAGCC
AACTAGACGT AGTCGACGTT TTCTTGGTGT CTTGGACTGG TTCACTGGTG GGACAAGCGA
GGAAGATTTA GCCTCTTCTG ATCCAGAAAG GACCTTCTAC TACTGCGACC AGGACGAGAA
CGGCAACGCG GTACCCAGAA CGGATCTGAA AGTGGGTGAG AGCGATCCCC AAGCCTCTGG
CCTCCCCGCA CATATTGAAA TAACGAGCGA TCAGCTCGAA GCGCAATGTG GGCCTTACTG
TCAGTTGGAC GAAAACGGTC GCCGCTTGGG TGAAGAAGAG ATCGATGGCA GCCATCGCAA
GCTCCAGGGA ACTTTGAAGA ACCTCGTGGT CCTTATGCGG TTCAGCGATC ACGCTACTCG
GGATCTTCCG TCGGTGGGTG AAGTGGACGA CCTGATGAGT GCCGATAGTC CCACCACGTC
CTGTCCTACT GGTAGTGTAA AGCAGGTGTT CTTGGAGAAC AGCAATGGTC GATTGATTCT
CGATTCCACC GTCTACCAAT GGGTGACCCT CGACCCCTTA TACACGGAGA TATACTGTGC
CAATGGACGG TCCGGTCTTG ACGCACGCGT CCACGAATGC ATTGCGAACG CACTGGACCA
GGTTGAAGCT GGTGGATTGG ACTTCCGTGA CTTCGATCAG GACAGCGACG GCAGAATCGA
TGCCATTACC TTTCTGCACT CGGGCTATGG GGCAGAATGT AAGTTTCGAA AATAGAAAAT
ACGGCAGTCG CATGAGATGA TAGTGCTCTC CTATAAATAT CTGACAATCT CTTCTTCTGA
ACCCTTAGGG AATGGAGCTC CTAATCGCAT CTGGTCGCAC AAGTGGGTGC TATACTCCAT
CAACGACGGT GGCGGGAGTG GCTGGACGTC TAACACGGGT GTGAGCGTGT ACACCTACCA
CATCAGCCCG TCTCTGTGGG GCACTAGTGG CAATGCAATT GGTCGCATCG GAGTCATTGG
TACGTAGCGT AACGGCACCA CACAAGGAGA ACTGGCGCTC TGTGGTAGTC GCGCTTCGAC
TTTTGCCCCG AGTAACTTCC TGTTGGGACG AACTCACACA TTTCTCAATC ACTCTGTCTT
TGCAGCTCAT GAAACCGGCC ATTTTCTGGG ACTACCTGAT CTCTACGACA CCGATGGAGG
CGGACAAGGG CTAAACTCCT GGAGTCTGAT GGCCAACAGT TGGGGATTTG ACGGGTCGCA
GCTGTACCCG CCTCTCATGG ATCCTTGGTG TAAAATCCAG CTAGGTTGGG TCACTCCCAC
AGTCTTGACG GAAACCTCTC GAAGTATCGA GATTAAACCT TCTTATACCG AGGACGACTA
CTATGTCATC CAAAAGGGTT TCCCACAGGG AGAGTATCTC GTGATTGAGA ATCGTCGCAG
GGTGGGATAC GACAGCCAGA TTCCCAGGGT AGGTTTATGT TTTGTTTTGT TTTCCAATGG
GCCATAATGC TGACTGTTGA GTCGACGTGA ATTCTTACCT GTTATCCTGT CATGCCTTGC
CTTGCTCTTT GACTGTGAAT GTCGTTTGAT TGTAGGAGGG ACTTATGATC TACCACATTG
ACGACAGTGC TAGTTTCAAT CGAGAGGGCT TCCCAGGCCA ATTTAATTGG CCTCAAAACG
GAAACCACTA CAGAGTAGCG CTCTTGCAAG CTGACGGGGC CTACAATTTG GAACGAGGAC
GCGGTGGAGA TAGTGGTGAT GTGTTCCACG GCGGGAGCGG CGGCGTTTCG TCCCTTGGCC
CTGGTCCGAA TGTCTATCCA AACACTGATA GTTACAAATT TGGTAACATT GTTCAAACTC
GAGTCACCAT TGAGAATATA AGTCCGGCCG GCGAGATGAT GACTTTTGAT TTCCTGGACG
GCGACGATGT GGTAGAGGGC GCTCCGACCC AAGCACCCAC AACAGAAGGC CCGCACGAAA
TTAGTGTTAG AGTGACGCAC GATAGATATC CCGAAGAAAC GTCCTGGAAC CTAGTAAACG
TGGCTGGAGG AGGCGTACTT GCTCGTCAGA ATGCAGGCGA AGTCACAACC GACAATACGG
TTGTTGTAGA GACAATTCGA GTTTACCCCG GCACCTTTCG GTTCGACATA TCGGATGTGT
ACAACGATGG CATTTGCTGC ACCTATGGAA TAGGGTCTTT CGAGATCAAG GTTGATGGTA
TGGTTGTTTA TGCTTCTGAC GGGTCGTTTG GTCAGTCTGA TAGTACCACG TTCGAAGTCG
GTGGCGTCAT CATCGATACG TCCGCACCAA CGGGACAATC CAGTCCTGCG CCCACGCCGA
TTCCGACTGT ACAACCCACA GGGCCGCCCA CTGTTTTTCC TACAGTTTCG CCTAGCACGA
GTCCCACCTT CCCTGCTCCA ACAGCTCCAC CGACTGTGAC GCCAACGGAT AAGCCTACCA
CTCTTGCTCC GACAAACGCT CCAACCAGTC AGCCTTCAAG TGTTTTCACG GATGCTCCAG
TACCGACATC GACCGCTACG CCAGTCTCGA CTTCAAGCGC TGCACCTACA ACTGTTTCAA
CAATGTCACC ATCCGCAGAA GAAACAAGCA CTGAAGAATT ACACCTAGTT GAGATTGAAG
TCATCCACGA CAATTATCCT CGGGAAACAT CCTGGACGTT TACAGAATCG AATGGTTCCA
ATGAAATTCT TGCATCCCAA GCAAGGAATT CTGTGGTCAC AAACGGGCAC GTTGCAAACG
TAGCTCTGCT GGTTTCGTCA GGAGAATATC TTTTTGAGAT CAAGGATTCT GCCTGGGACG
GTATCTGTTG TGCATGGGGA AATGGTAGCT ACACAGTGAA GGTGGATGGT ACCGTTGTCT
CTACAGGAGG TGAATTTGGA TCCTCAAAGA TTGAAAGTGT CAGTGTCGGC TCCTTGGAAC
CACCAACCAC CGATTTGACT ACCGTAAAGA TTCAAGTGAA GCACGACAAC TACGCAAGCG
AAACTGGTTG GGAACTGCTA AATGCAGCAA CCAATGCTGT GTTGGCTAGG CAACTGAAAG
GTACCGTTTT TAATCGCGGG CAAATCATTA CGAAGACGGT ATTGGTCCCT GCTGGAGACT
ACACTTTTCA TATTACGGAT TCCTTCAGCG ATGGCATTTG CTGCTCCTAT GGCGAAGGCC
TTTACGAAGT GACTGTTGGC AACACCGTTG TCGCAAGTGG TGGCGATTTT GGAGCCGAAA
GCTTTGACAG CTTCACGGTA GATGGTCCTT AGGTTGGTAG AGAAGCATGC TGTCTGTCTT
CTTTTTTGCG CAAACAATCA AATGCTGCGA TACTAAGTGT AACCTCTACG TAACGATTTG
TTGCATTTGT ATTATCGGTT TGAATAAGTG TACAGATGCA TCTTGCTTGC TGTATGGCAT
CGTTCAAAAA GATCGC
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| Protein sequence | MKFPSQLGAT VAFVVVAATT TKTVSGNLAS PFPFEETNAD GTPTGEMYIH GGPGESWFED
KQGFTICPVD EQPTRRSRRF LGVLDWFTGG TSEEDLASSD PERTFYYCDQ DENGNAVPRT
DLKVGESDPQ ASGLPAHIEI TSDQLEAQCG PYCQLDENGR RLGEEEIDGS HRKLQGTLKN
LVVLMRFSDH ATRDLPSVGE VDDLMSADSP TTSCPTGSVK QVFLENSNGR LILDSTVYQW
VTLDPLYTEI YCANGRSGLD ARVHECIANA LDQVEAGGLD FRDFDQDSDG RIDAITFLHS
GYGAEWNGAP NRIWSHKWVL YSINDGGGSG WTSNTGVSVY TYHISPSLWG TSGNAIGRIG
VIAHETGHFL GLPDLYDTDG GGQGLNSWSL MANSWGFDGS QLYPPLMDPW CKIQLGWVTP
TVLTETSRSI EIKPSYTEDD YYVIQKGFPQ GEYLVIENRR RVGYDSQIPR EGLMIYHIDD
SASFNREGFP GQFNWPQNGN HYRVALLQAD GAYNLERGRG GDSGDVFHGG SGGVSSLGPG
PNVYPNTDSY KFGNIVQTRV TIENISPAGE MMTFDFLDGD DVVEGAPTQA PTTEGPHEIS
VRVTHDRYPE ETSWNLVNVA GGGVLARQNA GEVTTDNTVV VETIRVYPGT FRFDISDVYN
DGICCTYGIG SFEIKVDGMV VYASDGSFGQ SDSTTFEVGG VIIDTSAPTG QSSPAPTPIP
TVQPTGPPTV FPTVSPSTSP TFPAPTAPPT VTPTDKPTTL APTNAPTSQP SSVFTDAPVP
TSTATPVSTS SAAPTTVSTM SPSAEETSTE ELHLVEIEVI HDNYPRETSW TFTESNGSNE
ILASQARNSV VTNGHVANVA LLVSSGEYLF EIKDSAWDGI CCAWGNGSYT VKVDGTVVST
GGEFGSSKIE SVSVGSLEPP TTDLTTVKIQ VKHDNYASET GWELLNAATN AVLARQLKGT
VFNRGQIITK TVLVPAGDYT FHITDSFSDG ICCSYGEGLY EVTVGNTVVA SGGDFGAESF
DSFTVDGP
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