| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_34147 |
|---|
| Symbol | |
|---|
| ID | 7197909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011672 |
|---|
| Strand | - |
|---|
| Start bp | 1211776 |
|---|
| End bp | 1213551 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178662 |
|---|
| Protein GI | 219115733 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTC CTCCGCTGTC ATCTTTGTGG ACCACCAACA CTCTCTTTGG AGAAACGCAA
CAGCTCAGTG CTCGTCGGCA GTATCAACCA CAGCATCAAG ATCGAGACGA CAATCACGAT
GGTCTTGATT TCTCACGAAA TGAACGTCTT CGGGACGATC CGGATGTCCA CATTGGCAAG
CGACACTCCT TGAATAAAAT TAATCAATTT CTCTTCGGCT TCATGTACGA AGACGAGAAC
GAGGAAGACG ACGATGATGT TTTGTACCGA TCTACGGTAG AACCCTCGAC ACCACTATGG
AACCGACTCA ACCTGTCATT GTTCGGTATA CTCTGGTTGC TTTCTACGGC TGAAATTATT
CCCGTTACGT TGGTGGTTTC CATGTGCGAT AATTTTGTGG AGGTATCGGA TGGAACGTGG
ACCAGCGACG CTACGACGAT TCCGTCAACG ACTGCCACTT CCGCTGCAGC ACGCTTGGCA
GCGGCTGCCG TTTTGGGCAC GTCCATGGGA AAACTGATCA ATGGACCCTT GACGGACGTG
TGGGGAGCCC GCCGATCTTT ATGTGTTGCT TCCGGGGCCA TGGCGGTGGG TCTCGTCCTG
CTGGCTACGG CAATGACGCT CGACACTGCC GCGATGGCTT GTTTTCTGGT GGAATACGCT
TACGCCATAA CGTGGCCGTG CTGTGTGGTG ATTTTGGCGA CGCACTATCG CGGAAACGCA
TCCGGTATGT ACGAGGGAGG CATCTACGTC ACATCACTCG CATCCCGTTT GGGAGCCCTT
ACTGGTATTC CCCTCGCATC CGTGTTGTTG CGGCATACAA CAGAAGCAAC AACAACAACA
ACAACAATGG TTGGATCCTC TTGGCGTTTG GTGGCTCTCT TGGCTGCATG GATTGCACTG
GTTGCCTCGT CGGTGGTATA CTTTTATGTT GCGGATACAC CATCCCGAAA ACACCAACCA
CAGAATCCGC TAGACCCAGT GTGGCTCAAC AAGTGGTTTC CCTCTTACGC CAACGGAAGT
CGTCCTTTGA CGCTTTCGAC CACCTTACGA CTGATACCCT TTGTTGTACG CTACAACTTG
GTTCCTTCCA TGAAGCATGT ACTGCGGAGT GGTACATTCT GGATGGTGGC CTTGGCGCAC
ACGGGATCGA GTATGGTGCG CACGTCGGAA CGATTGATCG GCACATACTT GTCCGATACG
AGTAACGATA GCCTCTCACA CAACCGTGCC GGCGGCCTTG CCGTCTTTTT GTCGCTGGGG
ACCGTCATAG GTTTGCTCGT GGCTGGGAAT CTCTTTGCTA CTTTGCACGA ACGCGCGCGC
AAACGACTCG TCACTCGACT GTATATTCTC ACAATTAGTG CCTGCTACGT ACTAGCCTTG
TTGGCCATTC CGGCCGTGCG GAATACGTGG CAAGCACCGG AGCTGGTCAC GACCTTTCAA
GTCATGGCCG TGGCTGTGGC CGGTTTCGGA ATTGCCGTAC AATTTTATCA TATTCCCGGT
TTGGTCGGTG CGACCTTTGG CTGTGACAAA GGCTTGTTCG CGGCCTACGT CGACGGGGTT
GCCTATTTGT TTGCTTCGTA CGTATGGCGC CTAGTGATTG GCAAGGCTGT CCAGGATCCC
GTCGATGATG ACGGACTCGG GTGGGCCTAC GGATGGGCGG CGGTAGCCTT GTTGCTCATC
CTTTCGGCGG TGCTCATGGT AGAGTTCATG GAACACTACT TTTGTCGATC ACTTCATCAA
CAGGGCGGGA CTTACGAAAC AATTATCTTT GCGTAG
|
|---|
| Protein sequence | MTLPPLSSLW TTNTLFGETQ QLSARRQYQP QHQDRDDNHD GLDFSRNERL RDDPDVHIGK
RHSLNKINQF LFGFMYEDEN EEDDDDVLYR STVEPSTPLW NRLNLSLFGI LWLLSTAEII
PVTLVVSMCD NFVEVSDGTW TSDATTIPST TATSAAARLA AAAVLGTSMG KLINGPLTDV
WGARRSLCVA SGAMAVGLVL LATAMTLDTA AMACFLVEYA YAITWPCCVV ILATHYRGNA
SGMYEGGIYV TSLASRLGAL TGIPLASVLL RHTTEATTTT TTMVGSSWRL VALLAAWIAL
VASSVVYFYV ADTPSRKHQP QNPLDPVWLN KWFPSYANGS RPLTLSTTLR LIPFVVRYNL
VPSMKHVLRS GTFWMVALAH TGSSMVRTSE RLIGTYLSDT SNDSLSHNRA GGLAVFLSLG
TVIGLLVAGN LFATLHERAR KRLVTRLYIL TISACYVLAL LAIPAVRNTW QAPELVTTFQ
VMAVAVAGFG IAVQFYHIPG LVGATFGCDK GLFAAYVDGV AYLFASYVWR LVIGKAVQDP
VDDDGLGWAY GWAAVALLLI LSAVLMVEFM EHYFCRSLHQ QGGTYETIIF A
|
|---|
| |