Gene PHATR_54192 details

Gene Information

• Locus tag: PHATR_54192
• Symbol: SMC5
• ID: 7204040
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: -
• Start bp: 1008701
• End bp: 1012215
• Gene Length: 3515 bp
• Protein Length: 1099 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002186447
• Protein GI: 219113727

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ACCTGCATCC AAAGTGCACC ATGACGAGTG ACTCGGACAG TGAAGAGGCC TACATCCGAC 
GTGTGGGTAC GCACAAGGCG GGTTCTATTA CAAGGATTAA GCTACACAAC TTTCTGACTT 
ATTCCGATGT CGAATTTCGT CCCGGGCCGC GGTACGTATC CGTATTGTCC ACGCCGCGCT 
CGAATGCATC CAGCCATTGC ACGGTTTTCT GAAAACGCGG AAAAGTCACG CGTTCTCAAC 
TCTGTTGCGT ATTGTTTTTG TGCAAAAGTC TCAATATGGT CATTGGTCCT AACGGGACGG 
GAAAGTCGTC GATTCTGAAC GCCATTTGTT TCGGACTGGG AGGGGAGCCC AAATTACTCG 
GTCGGGCAGA CGACGCCCGT GCATTCATCG CACACGGCAA GGACCACGCC GAAATTGAAA 
TCGAGTTGGC GCCGCTACCC GGCAAGGGTA CTCACGTGTT TCGACGTACC ATTGATCGTC 
ATAAGGGGTC AGAGAAAGGC AAAGGTCGGG GGGCGTCGCA GTACTTTGTC AATGACGAAA 
AGGTACACCC CAACGTGATT CGGGAAATTG TGTCGGAGGA CTATAATATT GCCATTGATA 
ACCTCTGTAC CTTTCTGCCA CAAGACAAGG TGGGGAGCTT CTCGGGCTTT GATTCGAAAC 
AGCTTTTGCA AGAGACGGAG AAAACGCTCT CCACGTCGCA GCACTTGTAC AGGCTACATA 
TGGATCTGAT CCAAGCCGAG GCTGAGCTAC AGTCGGGAGT CGTCAACGTC GATACAATAA 
AATCCAAATT AAAAAAACTA GAGCACGAGA ACAAACAGCT CGAGCAAGAA AAAATGCGTG 
TGGAAGAACG CGAAGAAGCT CTAGTACAAG CCGAAGTTTT GGAGAAGAAA AGAATTTGGC 
TGCAAGTCGA TGTGTTGCGC GAAGAAGCCG TCTCGTTAAA AGAAGCGAAG ACGGAAGTCA 
AGGACCGCCT CAAGGCCGCT CATGCAGAGC TCGCTCCTTT GCAAGAGGAG CAGCAACGTC 
TTGCAAAGGC TTGGAAGGAA GCCGATCTGC AGTTGAAGGT TCTCGAAATG AATAAGCAGA 
AATGTAACAA AGAAATGGAA AAACAGCTGA AGAAGTACGA GAATCATGAC GATGGTATCG 
AGGAGGCGCT CGCTATGCTA CGCGAGCTGG ACACCAAGCA TGAAGAAGTA CAAGCTCGTT 
ACCGCTCTCA GGAAGAACGC GTCGCGACTT TGGAAGAGCA GCTCTCTAGT TTTGCGACCA 
CTGAAGAAGA AATGACAGAC CAGTATAACG AAGCCAGGGA GGCGGCTCGT GTTGCGTCGC 
GCGCATACGA ATCAGCTAAA CGCGAGCTTG CCAGACATCT CGAAAAAGCT CACCTACTGA 
AAGAAAAGGG TAAAGAGGCG CAGATGAAGC TTGCGAAGAT GAACGACGAA GGTGCCCGGC 
GAAAGGAACG AATATTTCGA CAAGAAAGGA ATCTCGGGCA GATTTTCGAA TGGCTGGAAA 
GTAACCGGGA TAAGTTTCGT CGCCCTGTCT GGGGTCCGGT GGCCTGCGAA GTGGCAACCA 
AAGATCAGAA TACTGCGGCT GCTTTGGAGC AACACGTTCC AAATTGGGTA TTGAAATCCT 
TTGTCGTCGA AAACAAAGAA GACTATGATT TTTTGTTTAG CGAGATTCGT GAACGTCGTA 
AAATTCCGAT CAATATTGTG AATACGGATG GCCAGCGACT TTCGGATCCG CAACGGCCGT 
ACTCGGAAGA GAAAATGTCG ATCCTTCAAA AGGAGTACGC GATAGCAGGG TATCTTGATC 
ATTATTTTAC AGCTCCTGAC CAGATTATGC TAGTACTTCG CAAGCAAGCA GCGGTGCACA 
AAGTTCTAAT GGGAGGAGAA GAAACGAATC AAAAGCTTAC AAAACTGACG GACTTCATTT 
CGGAGCCGGA TATCTCCCTA GGTCAGACCG ACAAGCAGCC TTCGGTCCTA TTCTGTTCTG 
ATAATGGCAA AGCGCTTAAG TTCAGCAACG TTGTCTCAAG ATACAGTAAG GAAATCTCAT 
CGCGACAGGA TGATATCAGT CAAGCTCGCC TTCTGGCGCC GGGTGTCAAT CCTCGCGTAA 
AAAAAGAGGC CGAGGACAGA ATTGCAGAGG CCAATGCCGA AATGAATGAA CTGAGGCCAG 
CGATTGAAGA CTCCCAGAAA GAAAAAAATA AAACTGAACT TGCAGCCCAA GAAGTGAAGG 
CCAAATTACA GTCATCAAAG CAGTCTTTGG AAAGTCTGAA GAAGTTTCAG CAGAAACTGG 
AGAACGCTCG CAATAAACTT GATGATGCTC GGCGCGATTT GGAAAGCGAT GACGAAAAGG 
AAAAGAAGGC GCTGGTACAA TCTCTAATGA ATCGAGTTGC TCATGGGGTG TCGGCCCTGG 
AAGTCCATGC TCAACAACAT GAGCAAATGC TGCTAGCAAC AATGGAGAAT GCCGGTCTTC 
AAATTTCTCG CAACGATTTT TCAGTAGCCG AGCGTAGAGC GAAGTACGTA TGTGTCATTG 
CTAGCCGTCG ATTGTTGTGT TCGCGTCCCT AACTAATCTT TGATTCGCAT CTCAGAGAAC 
TTGTCCTCGA GAAGAACACT AGCTTTAAGG GACTTGAGAC TCGAGCGGTG AAGATTCAGA 
CAGACTTCAT GAATGTGAAA AAAGAATACG CGAAGCTGAA GACGGAAGCT GAGCGAGTTG 
CGCCTTTGGA AGACGAAAAC GGCAACAAAA CAGAGCTATT TGATCAGCTC CAGGAACTCG 
AGGTTACGAC TTTGCATGAC TGCGAAGCCG CCCTCGACGA AGCAGTCAGC AAAGCAGATG 
AATACGCGGA CAACCCGGAC GCCCTACGGC AATATGAGCG AACAAAGGCA GAGATCGAAG 
AAGTTCAGAC GAAGCTGGAC GATTTGACGA GCTCGAAAGA TGCCAAGCTG CAGGAAATCC 
GAAATAAGAG CAATCCGTGG CAGGCTGCGT TGGAGAACTA TGTAAGCAAG GTGGACAAAC 
TCTTCAGCGA GTACATGCAG GAAATGGAAT GCACCGGCGA AATTCGTCTA AAAAGGGGTA 
AAATCGATGA AGATGATGAA AATCAGATAG GCAACTTCAA GGACTGGGGT ATCGAAATTC 
TGGTGAGTTT TCGGGAAGGT ACGAAGGCGC AAATTTTATC AGCACAGGTC CAGTCTGGAG 
GTGAGCGTTC GGTCAGTACA ATCATGTATT TAATGGCTCT ACAAGACATG ATGGTAGCCC 
CATTCCGATG CGTTGACGAA ATCAACCAAG GCCTTGACGA TCGGAACGAG CGGCTTGTCT 
TTCGTCGCAT TGTTGAGAAC TCAACCCGTC CGCCGAAGGG CGAGCCGTTC GAGCACGTTG 
GACAATATTT TCTCATCACG CCGAAACTTT TGCCGAATCT TGTGGATATG GAAGAGGAAG 
GCGTCACGAT TCTTTTTGTT TTTAATGGTG AGGGAATGCA CCAGAGTATA TTTTTTTATG 
AATTGTCTCA TCTCACACTT TGTCCTCTTG TTTAG 

 

Protein sequence

MTSDSDSEEA YIRRVGTHKA GSITRIKLHN FLTYSDVEFR PGPRLNMVIG PNGTGKSSIL 
NAICFGLGGE PKLLGRADDA RAFIAHGKDH AEIEIELAPL PGKGTHVFRR TIDRHKGSEK 
GKGRGASQYF VNDEKVHPNV IREIVSEDYN IAIDNLCTFL PQDKVGSFSG FDSKQLLQET 
EKTLSTSQHL YRLHMDLIQA EAELQSGVVN VDTIKSKLKK LEHENKQLEQ EKMRVEEREE 
ALVQAEVLEK KRIWLQVDVL REEAVSLKEA KTEVKDRLKA AHAELAPLQE EQQRLAKAWK 
EADLQLKVLE MNKQKCNKEM EKQLKKYENH DDGIEEALAM LRELDTKHEE VQARYRSQEE 
RVATLEEQLS SFATTEEEMT DQYNEAREAA RVASRAYESA KRELARHLEK AHLLKEKGKE 
AQMKLAKMND EGARRKERIF RQERNLGQIF EWLESNRDKF RRPVWGPVAC EVATKDQNTA 
AALEQHVPNW VLKSFVVENK EDYDFLFSEI RERRKIPINI VNTDGQRLSD PQRPYSEEKM 
SILQKEYAIA GYLDHYFTAP DQIMLVLRKQ AAVHKVLMGG EETNQKLTKL TDFISEPDIS 
LGQTDKQPSV LFCSDNGKAL KFSNVVSRYS KEISSRQDDI SQARLLAPGV NPRVKKEAED 
RIAEANAEMN ELRPAIEDSQ KEKNKTELAA QEVKAKLQSS KQSLESLKKF QQKLENARNK 
LDDARRDLES DDEKEKKALV QSLMNRVAHG VSALEVHAQQ HEQMLLATME NAGLQISRND 
FSVAERRAKY VCKNTSFKGL ETRAVKIQTD FMNVKKEYAK LKTEAERVAP LEDENGNKTE 
LFDQLQELEV TTLHDCEAAL DEAVSKADEY ADNPDALRQY ERTKAEIEEV QTKLDDLTSS 
KDAKLQEIRN KSNPWQAALE NYVSKVDKLF SEYMQEMECT GEIRLKRGKI DEDDENQIGN 
FKDWGIEILV SFREGTKAQI LSAQVQSGGE RSVSTIMYLM ALQDMMVAPF RCVDEINQGL 
DDRNERLVFR RIVENSTRPP KGEPFEHVGQ YFLITPKLLP NLVDMEEEGV TILFVFNGEG 
MHQSIFFYEL SHLTLCPLV