Gene PHATR_43917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_43917 
Symbol 
ID7204358 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011671 
Strand
Start bp419109 
End bp421842 
Gene Length2734 bp 
Protein Length784 aa 
Translation table 
GC content53% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002186341 
Protein GI219113515 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.373616 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGAAC CTGCTGGAAT TGTAGAACTA CGGCGGTACG ATTTACGAAC GAGACTCTAG 
AGTGACCGTG ACTACGGTGG TGGTGACGGC GAAGGATCGG CAGTCCCTAC TATAACGACG
AGAGAGACAG GGTTTCTACA AACGAGGGCT TCGGTGTCCA CGATTTACGG TGGCTTCGCG
GTAGTTCCGA ACCGGAAACG TTCCCAGCAC GACCCAACGC AACCCCGCAC ACCACCACGA
CTACCCGACG AGGCTTCATT GTTTCCAGTC GCTCCGGCCG GATCCCTCCC CCTCGTTGGG
TACACACACA AACACGTCCG CAATTCCTTC CGTTGCGTTA CGGTCCGTGC TGGAATGAAG
GACACGCAGC AACTACAACT CTTGGTCTGT TCCGCTAATT TGGGCAACGA GCAACCCGAT
CCCGACTCCT TGGCTGCTTG GATTCCCACG GATGGCGCTT GCCAAGCCGT TCTGCGTCAA
GATGCACCGT ACCCCGTCCA ATCCTACCAC TACAGTAGCA GTACCAACCA CAATAATCAC
AACAACAACA ACAACACGAG CACTCGGTCG TTGGAGGCAG ACAATGACGT GCCGTCGGAT
GCGTCCCGTT ACACCGACAC GGATCAGTTT GATATGATCG TCATCGGCAT GCAGGAGGCG
ACCTTTGACC CACCGGCGGG GGCGACCCGC GTCGGGACCC GTCATTCGTA TACAGGTACC
GGTCGTCCAA CCCATTCTCG AGAAGGGCGT CAAGAAAGCC TTGGATACGG TCAACAATCT
GACCGCCACG CGTGATCATA CCAAAAAGAC CGCCAGTATC GGTGTTCCCG ACTGGAGTGG
AGGAACGGCC GCGCTGCACA AAATGCTCGA ACTCAGTCTC CCGTCCTACC AGCATGTCGT
TAGTTACCAA CGAGGGCAAA TGCGACTCGA AGTCTTTACA CATGCCCAGC AGATTGACGT
TCGAGTCCTC CGCACGACGG CACAGAATAC GGGACGCGGA GGATTGGCCA ATAAGGGAGG
CATCGTCACG GAGCTGCTGG TCAATGAACA CACGCGGTTG GCCTTTATGA CTACTCATTT
GGAAGCGCAC GAAGGAGCCA GCAAGTGTGC CATTCGCAGC AGCAGCCTCG GGGACATTCT
GGGTGGGACC AAGACCAAAC TACACGACGT TTCGCAGACG GCTCACTACA CGTTCGTCCT
CGGAGACTTG AACTTTCGGA CCGAGTTGCC CGGGTCGCAC TTTTTGTCCG AAGAAGATCA
CAAGGCCCGA GTGTGGAATT GGGTCGCAAC ACGAAACTGG CAAGCTTTGA ACGATGCGGA
TGAATTGCAA CGGGAACTCC GGAATAAAAA CTGTCTGGTG GGATTTCAAA CGTTGCGGTG
CAATTTTCCA CCCACCTTCA AAGTAGAACG ACAGCCCGGA TACCAGTACA TTGACAAGAG
ACGACCATCG TATACCGATC GGATCTTGTG GAAGACCGGG CATCAAATGG AACAGGGGGT
GGTACCGTTG GTGTACGAGC CAATTGATGT CTTCGCGTCC TCGGATCACA AGCCGATTCG
GGCCGCTTTT GGCGTCGACT TGAACGACTC GTTCCGGATG CGTCCTAAAC TGCACCGGAA
CCACTCGCAC ATCAATTTAT CCACATTGCT GCATCGGAGA AACAGCCAGC CGAACCTCCG
TCAGCCCGTT GTCGCCCATC GCGACAAGCT GCAACTCTTC GTTTCCGGCA TGGCGTGCCA
GCTTTTTCCA AATCGAGATT TGCCTCCGAA CCCGTACTTG TGTTTGGTTT CTTCCCCGCC
CGATGCATTG CAAGTGAGTA CCAGTCGTTG GGTGCAAACG AAAAGTCTAC TTTTTTGCCA
GACTTTGGGT AAAGTCGGTG GTCAGGCTAC GACGGCGCAA GGCTGGCCGC GATCGAGTTT
GCAAATGTCG ACCAATACAC CAAAATGGGA CGGGGAAGAG ATTCACTGCC AAATACAAAC
TCACGGAGCA GATGGTTCTT CGTTGGACCT GACTGGTGCG CTCTTACACT TGACGATTAT
GAACTATAAT CCGAGCAACC AAGATTCGGT GGTGGGAACC TTCACGTTCA ATCTCGTGAA
TCTGCTGCGC TCTTGCCGCC GGACGAGCCC AGAGACTAAT TCGGGTTCCG AACGAGATCT
GCAAGGGAAG AGAGGACCCC GAAATCTGTT TCGTCGATCG CAAGCACAAA CTGCTGTTTG
GAACGATCCA ATCACCAGCG TTGACCTTGA CGAATCAATC TGCTTGAATG GTATGGAGAC
GGGAAGGATT CAGTGTACGA TCGATGCGTG GTGGATGGAT ACAGCCAAAG CCTTGGCGAC
CAGACCTGGC GAAGACCGCC GTAGTGCGGT CCATCGATAC ACTATCGCCA ACCAGCAGCG
ACGTGGTTCG AACGACATGC AACCGTCGAG TGGCGCAAGT ATGAATGAGA CTTGATCGAT
TTCATGTTTC GATTAGTCCT GTTCCACACA GAAAGGCATC GGGGATAAAC GCAAACGAAG
CCAACAATCC TATGTGTGTA CACAAATGAA GCCAAAGATC CATACAATCA GCGTTACTGA
CAGCAAAGAT ATCTACTATC TTTCTTCATT CACATTGAAA TCCCTTTACT TTCTCGGTGA
CAACTGAACA AGAAAAAGAG CCGTAAAAAG CCCTACCGTT CACAGCCGCT CAACCTTGCA
AAGCTAATCT TACACATGAA CATCCATTCG ATTC
 
Protein sequence
MPEPAGIVEL RRDRDYGGGD GEGSAVPTIT TRETGFLQTR ASVSTIYGGF AVVPNRKRSQ 
HDPTQPRTPP RLPDEASLFP VAPAGSLPLV GYTHKHVRNS FRCVTVRAGM KDTQQLQLLV
CSANLGNEQP DPDSLAAWIP TDGACQAVLR QDAPYPVQSY HYSSSTNHNN HNNNNNTSTR
SLEADNDVPS DASRYTDTDQ FDMIVIGMQE ATFDPPAGAT RVPVVQPILE KGVKKALDTV
NNLTATRDHT KKTASIGVPD WSGGTAALHK MLELSLPSYQ HVVSYQRGQM RLEVFTHAQQ
IDVRVLRTTA QNTGRGGLAN KGGIVTELLV NEHTRLAFMT THLEAHEGAS KCAIRSSSLG
DILGGTKTKL HDVSQTAHYT FVLGDLNFRT ELPGSHFLSE EDHKARVWNW VATRNWQALN
DADELQRELR NKNCLVGFQT LRCNFPPTFK VERQPGYQYI DKRRPSYTDR ILWKTGHQME
QGVVPLVYEP IDVFASSDHK PIRAAFGVDL NDSFRMRPKL HRNHSHINLS TLLHRRNSQP
NLRQPVVAHR DKLQLFVSGM ACQLFPNRDL PPNPYLCLVS SPPDALQTLG KVGGQATTAQ
GWPRSSLQMS TNTPKWDGEE IHCQIQTHGA DGSSLDLTGA LLHLTIMNYN PSNQDSVVGT
FTFNLVNLLR SCRRTSPETN SGSERDLQGK RGPRNLFRRS QAQTAVWNDP ITSVDLDESI
CLNGMETGRI QCTIDAWWMD TAKALATRPG EDRRSAVHRY TIANQQRRGS NDMQPSSGAS
MNET