Gene PHATR_43871 details

Gene Information

• Locus tag: PHATR_43871
• ID: 7204288
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 277541
• End bp: 279605
• Gene Length: 2065 bp
• Protein Length: 673 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002186032
• Protein GI: 219112897

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGGACC AAACAGCACT CCCAAAGACG TCTGGCGCCT CCCGCCACTT AGATAATGAT 
GCTCCAAGGG ATGAGGAAGG CCTGTTGCTT GAATACGATG CGATCATCTG CGGTACAGGC 
TTGACTCAGT CGATTTTGGC CTCCGCCTTG GCTCGCCATG GAAAGTCAGT CTTGCACTGC 
GATACTTCCG ACTACTACGG CGAATTGGAT GCCGTTTGGA CACTACCGTA TTTGCAAGAA 
AAGTTAGGAA AGGGACACGA ATTAAAAGGA AAGATGGTGA CTGTCAGAAC GGATGATTCA 
ACCTGCATTC CTCTGTCTCC AAAGGGTGGT TTGCAAAGCT TTCAAATACA TTCTCTCGAG 
CGAAGGAACG ACTTTACTGT AGAACAAGGA ACAGCAGTAG TTACGCCTTA TGGGAATGGC 
ACAATTATAT CGATTTCACC AAGGGGGCTC TTTCTTGATT TATTAGTTTC ACTCGACACA 
TGGAAGCTAG CGAATGGAAA AAACCCATCT GTTCATATCT CCATTCCGCA ATCCGCAGCG 
AGTACTGGCG CAGCTTTTCA GAAATATCTG AAGGAAAAAC TCGGAATAGT TTCCATCGAT 
GAGCGTGATG CTCATTTGAT TTTGGACGAG CGTAGTCGGG GATTCGCGGT AGACGCGACA 
CCAGGATTGC TCTATGCCTC TGGCGCATCG GTCGAAGGGT TGCTAAAAAG TGGCGTCGCC 
GACTACCTCG AGTTCAAGTC TCTCGAAGGC CTCCTTTGGT TGGAAAACTC CGACAGTTGC 
TTGGAACCCG TGCCTTGTAG TAAAAATGAT GTTTTTGCAT CAAAACTTTT GTCACCCATG 
GACAAGCGTC GACTTATGAA GTTTCTGCAA CTTGCGTTGG ACTACGGCAC AGCCCATGCG 
TTGGCCGAGG AAGAAGCTTC TGCCGAAAAC AACAAACAAG TCTTATCTCT GAACGAGCGG 
TATTTGAATC AAGGGAGATC TCTGGCACGT CCTCAAAATA AGGCAGTACT AGCAGACGAT 
ATTCGAGCTC TGCAGGAATT CATACAGGCT GACATGAAGT TTCATGAGTA CCTCGAAAGC 
AAACAGCGGT TGTCTCCCAA ACTGTGCCGC ATAGTACGCC ATGCACTAGC GCTTGAATCT 
GGCAATGGTG ATTGGTCGTT GAGGCAGGGT ATGACTTCTT TGTGTCAACA CATGCAGGCT 
TTAGGAAGGT TTGGAACAAC AGCTTTCTTG GTACCTATGT ATGGATCGGG TGAGCTTCCA 
CAGGCCTTTT GTCGATCGGC AGCCGTTTAT GGGGCTACCT ATTTGCTACG ACGTGCTCCG 
CTTGCAATTG TTACCGATAA AGAAAGAAAC AACAGTGAAA GCTGCCGCCA TTGCCACAGA 
CGGTGAAGCT AGCGCGGCAA TGGTAAAAGA AGTCATGTGC CGTCACATGG TTGTTCCGCA 
GGATTCTGTG GCTACACTTG AATCAAAGTC TCGCCGCGTA TGGCGCTATC TTTGTATTTT 
CCGGGGGAAA GTTGTTGGCA GTAGTCGCTC TCCTCAACGG CACGCAATCA TTGTTCCTCC 
TGGAGCGTTT GGTCCTGACG CTGTTCGTGG GGTCTTACTG GACGAGGGAG TAAATGTGAC 
TCCACACGTA CCCTGTGGCT GTACCATATT GCATCTTACC ATGGCGGTAG AGAACGATAC 
AGGAATCGAC CCGCAAGACA TATTGCGACG AGTATCGCTT TCGGTACTGT CCAGCAAGTA 
TGAAGGTAGC AATGCTATTC GCATTTTTCA AGTAACATTC AGCTACGCTC TACCAGAGGC 
ATCCAATCAA ACGAAGAATG TTCAAAATTT GCATTGTGTT CAGCGCTCAG AACCAGGCCT 
TTCCGCCGAT TCCTCGTTTG AACAAGCCAG AGAAATCTTT GCAGCAATTT GCCCTGACGG 
GAATTTCTTG GCCATATCTG AACAGGTTGA TACGGTTGTG AAAGAACGGC TTGGTGAGCA 
GATTGAGGAG GACGCTGACG GATTGGTTCT GGATAGTGCA ATGGATATCA TTGAACCTAA 
AACAAGAGAG AGTAGTGCTA CGTAG 

 

Protein sequence

MVDQTALPKT SGASRHLDND APRDEEGLLL EYDAIICGTG LTQSILASAL ARHGKSVLHC 
DTSDYYGELD AVWTLPYLQE KLGKGHELKG KMVTVRTDDS TCIPLSPKGG LQSFQIHSLE 
RRNDFTVEQG TAVVTPYGNG TIISISPRGL FLDLLVSLDT WKLANGKNPS VHISIPQSAA 
STGAAFQKYL KEKLGIVSID ERDAHLILDE RSRGFAVDAT PGLLYASGAS VEGLLKSGVA 
DYLEFKSLEG LLWLENSDSC LEPVPCSKND VFASKLLSPM DKRRLMKFLQ LALDYGTAHA 
LAEEEASAEN NKQVLSLNER YLNQGRSLAR PQNKAVLADD IRALQEFIQA DMKFHEYLES 
KQRLSPKLCR IVRHALALES GNGDWSLRQG MTSLCQHMQA LGRFGTTAFL VPMYGSGELP 
QAFCRSAAVY GATYLLRLKA AAIATDGEAS AAMVKEVMCR HMVVPQDSVA TLESKSRRVW 
RYLCIFRGKV VGSSRSPQRH AIIVPPGAFG PDAVRGVLLD EGVNVTPHVP CGCTILHLTM 
AVENDTGIDP QDILRRVSLS VLSSKYEGSN AIRIFQVTFS YALPEASNQT KNVQNLHCVQ 
RSEPGLSADS SFEQAREIFA AICPDGNFLA ISEQVDTVVK ERLGEQIEED ADGLVLDSAM 
DIIEPKTRES SAT