Gene PHATR_43830 details

Gene Information

• Locus tag: PHATR_43830
• ID: 7203962
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 161360
• End bp: 167196
• Gene Length: 5837 bp
• Protein Length: 1712 aa
• GC content: 52%
• Product: vacuolar protein sorting-associated protein 35
• Protein accession: XP_002186009
• Protein GI: 219112851

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.999564
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCTCGGTACT GTTGACGAAA ACCCTCGTGG GTGCTTCTCG ACGAGTGTAT TCGACGTGTT 
TGGGTACGAG AGAGCAATTT TCTTTGCTCC CAAAGATCCA GACTTTTGTT TGGACCCTTG 
ACACTGCTTA CTGGTTTGTT TATTGTGACG GTTACAGTTG TTGCTGCGCA AGCCACGAGC 
GTGTGTCTTT CGCACTCCTT CCGTTGAGAT TTGGCAGATT GTAGAGAATG GAACGTGTAA 
CTTCCAATGC ATCCCAAGCA CCTTCGGTGC AGAGCGATGG GAGTCAAACA GGCGGAGCTT 
GGGGGACGAT GGGTGGCGGT CCCGGAGACG GGTTCCAGTC CGGACCTGGC GGTTCCGTCC 
AACCCAATCC CAACAACAGC ACTACTACTA GCACTGCGTT CGCATCGTCC CAACCCTCCC 
CCGAAACCCC GGCTCCGTAT TCCCCCTATC CTCCCGGTTC CGGGAGCGTC ACCCGCTTTG 
CGCCATCCTC CACGCTTTCA CCCTACCCCA CACAAGCAAC GCCGTACTAC GGGGGTGCAC 
CCACGACACC CGCACTCTAT CCCGACACGC CCATGGCGGC GTCGTCGTAC GCGGCTCGTT 
CGGCACACGC CTACGGGACC GCATCCTCGC AGTCTCTTCC GCAATCCCAA GCACCGCCTC 
CACCGCAAGG AGCGGCATCT TCCTACGCGT CGCGTTCCGC ACAAGCGCAC GCATCCCGAG 
ACGGGTCGGT GTCCATCCAC ACCGGACAGT CCCACGCCTA TTCCGGAGCC CCCGTGCGGA 
ATATCCCACC TCTGGTGGGT GGATCGTACG CGTCACGATC CGCCCACGCG TACCAGTCGC 
AGCCACAGCC ATCCGCAGCG TACGGTCCCT CCACCTCATC CCCGTCACCC CCGTCCGGTG 
GACTACCAGG AACGTACGCC AGAGGTAATC CGCCGATGAA TGTAACGGGA GGGACGTACG 
GGTCATACGC ACCGCAACAG CCACAAATAT CAAATCCGCA ACCGCAGCCC AACGACGGTG 
CACAATCCAA CTACAATACC GCTGCACAGC CCAACAGTAC CCTACCACCA CCAACAACTC 
AAAATCCACC GCCCGGTAGT ACCACGAGTG TCCACAGCAG AAGTCACGTT AACAACAACA 
ACAACAGCGC CCCCATTACT CCGCAGGCAC AGGCCGCTCA GCAGCGCATG CTCACCGACG 
CATCGCGCAA GGTCCAGGAA CACGCCTACT ATATGCGCCA AGCCATGGAC GAACGTAATC 
TACCCGTTGC GTTGGATCGG GCCGCTCACA TGGTGGGAGA ATTGGGGGGA CCTCCGCACG 
GACATCACCA CACGACCCAT ACGGCGACCG GTCCCACCAA TACGGGTTTG TCCGCATCGC 
TCACGCCCAA GAATTACTAC GAACTCTACA TGAGGGCCCT GGAAGAAATG CCGGCCTTGG 
AAGACTATTT GCTGAATTTG ACCAATCCAA CAATGTACAA CACCGAGCCA ACGATTGAAA 
TCGTTGCGTC GCCGCAGCAT CTGCGTCGCG CACCCTATAC CATGACGGAA CTCTATGATT 
GCGTTCAATA CTGTCCCCGG GTCGTCTCGC GCTTGTATTT GCAAATTACC GCCGGATCGG 
CTTGGATTCG GTCGGGAGGC GACGCGGACG TGTGCTGGGT GCTGAACGAC CTCGTTCAAG 
CCGTCAAGTG CGAACAGAAT CCCACGCGAG GCTTGTTCTT ACGACACTAT CTCTTGACCG 
CTCTCAAAGA CAAACTACCC GATACACCCG CGCCCCACCA CCCGTCGACC CCCCATCTGG 
AAACAATTGT TTCCGAAGAA GAATTGGCGG ACGACGAAAC CAAGAGCCAT GACGACAACG 
ACAATCTTGA CGTCGGTCAA ACCGCCGCGC CGGTTCCCGT CGGCACCGTC AAGGATTCGT 
ACGAATTCAT TCTCAATAAT TTCATGGAAA TGAACAAGCT TTGGGTGCGT ATGCAGCATT 
TGCCGGGGGA TGGACGGAGT AAGGAAGTCC GTCGTCGTCG AGCTCGTGAA CGCAACGAAC 
TGAGAGTGCT GGTGGGGACC AATTTGGTCC GTCTTTCGCA ACTCGAACAC GTCACGTCCA 
AAATTTACGG AGAAGTCATT CTGTCGCAGA TTCTGGAACA TATTGTCACG ACCGGGGAAC 
CCTTATCGCA AGCCTACTTG ATGGATTGTT TGGTCCAGGC CTTTCCGGAT GAATACCACA 
TCGAGACCTT GCCGATTTTG TTGAATGTCT GTCCGCGATT ACGGGACAAG GTAAACATTC 
GCACAATTTT GCAAGGGCTC ATGGATCGGC TGGCGAATTA CTTGGCGGAA GAAGAGTTGC 
TCGACGAGAG TGATACGAAT CAAGTCAAAA AGGCACTGGC TCGTGATTCT TTCCGACTTT 
TTGAAGACTG TGTCCAGAAA GTCTACAATG CGCGCGGACC CAAACTGACC TCCCGCGAAG 
TAATCCGTTT ACAATCCGCG CTCTTGCAGT TTTCTCTCAA GTGCTACCCC GGTAACTTAG 
ACCAAGTCAG CACCTGTTTG GGACTCTGCT CATCAGCTCT GCGCCAAGCC AACGCGTCGT 
ACGATCCTAG CGACGCTACC AGGGCAAGCA TCATCCGACC TCTGGACGAT GTGTCGGTGG 
CCGAGCTGGA AAAACTTTTG TCCATTCCAC TCGATTCGTT GGCGTTGAAA GTATTGCAGC 
TCGAGCATTT TAATGGGTTA ATTCGGTTCT TGCCCTGGAC GAGCCGCCGG CAAGTGGCCA 
TCAAAATGCT AGAAGCTGTC GACAAGGCGG GTGCGCCTCC TACAAATCTG GACGAGATTG 
AAGAGCTGTT TAGCGTGATT GAGCCAGTAA TTCGCAATCC CAACAATACA GCATCGGGGA 
TAAGTAGACC ACAGCCGCAG CCGACTCACA TGGCAAATAC AGCCAGTCTC ATGGCCGGAT 
TGGGGGTCAC TCAGACTGAC GCTCCATCGT TCAGCCAGTC TTCCTTTAAC GACAATGATC 
ATTCGTCAGC GGCGGCACCG TCCCCGGAAT TGGCACGCGA GGATGCTCTG GTTGCTAAAC 
TTATCCATCT TTTGGATCAC GAAGATACTG ATGTGATATT TGCCATGCTC AAAATTGCTC 
GTGAGCATAT CAATCTGGGT GGGACTAAAC GCGCAAGTCG AACGTTGGTA GCCGTTGTAT 
TTGCTTGTTG TCGACTTGGC CGCCGGATTT TTGACACGGA AAATAGCAAC GATGAGAGCC 
TGCCGATAGA ATATAAGGAA GACGGCAGCA CTGCTATGGC GAAAGACGGC AGCGGCGACG 
ATGATATTCC AAAGGAGCAG CACGAATGCA ACGATAGTGA TGGTCCGAAA GAGAATAATG 
ATGATGACAG AGACGACAGT CCCAGAGAAA AAGACATCGA AAACAAAGAC GACAGCATAT 
CAGAAAGTAA GAAAGTGGAT ATTCCGCAAA AGACAGCAGA AACTGAGTCC GAAACGAAAT 
CTATGTCGGA AACGAAATCT ATGTCGAAAA CGAAAGCGAC CAGGTACGAA TTCACATTTC 
TACCATACGA GTATGTGAAT GACGCTAAGT CTGCGCGTAC TGACAGACGT TTTTCCTTCT 
GCCGTACTAC AGCTCCCGAA ATGTATTCGT GTTCATCCAA GACACGCTGT CTATGATAGG 
AAGGGCCAAC GCGGAGGTTG GCATCAAGCT CTATTTAGAA GTATCGCTTA TTGCTGATTT 
GCTGGCAAAG CGATCATCGG AATTCTCCGC AATCTCTTAC GAGCTCATGA CACAAGCATT 
TGCCTTATAC GAAGAATCAG TATCAGACTC AAAGGTACAG TACCGTTGTG TATCACGAAT 
GATTGGTACC TTGCTCTCCG TGGTGTCGCT TAGCAAAGAG GATTACGAAG GGCTGATCAC 
AAAAACGGCA CAATTTTCAG CAAAGCTATT GAAGAAAGCG GATCAATGCG AGCTAGTGGC 
ACAATGCGCT TACTTGTTTT ACCCAGTGGA TGCGAGTAAC AATGCTTCCA AGTACTCCAA 
CCCGCAGCGT GCTTTAGAAT GTTTGCAGCG ATCTTTGAAA CTAGCTGATG CGTGTACTTC 
CGCCAATGCT GGGAACGTCG GTTTGTTCGT CGATCTTTTG GAGCACTACG TATTCTTCTT 
TGAGAAAAAA AATCCTGTGA TTTCGCATTC ATACATAACG GGACTCGTGT CACTTATCAA 
AGAGCACTTC AATACTTTAT CCGACGATTC TGGCGTCGCA CAAGCCAAAA CACATTTCGC 
TGAGCTTGTT CGCTATATCA AAGCGAAGAA ATCCAACGAT TCCTCTTCGG AGCTGTTCTC 
ACCTGTCCAG GTAAATATGT AGTAACAATT TAATTAGTTG GAGATTGCGC ATAGTAGCAT 
GGAAGAGTTA GGCGCGAGGT AGGAAGCGAA GGTGCAACGC TTGCGATAGA TATGTGCACC 
TATTCCTGTA CGGGAATACG CTTTGGCCGG CAGTTGAATG ACTGCAGGAG CCCGAGTATC 
GTTACACATG GCGGATTCCA ATCGTACGTC CGTTTCAACC ATCTCGGTTC GTCTCTTGAG 
GCTTGGTAAA GATTTCTGTA ATCTGCGGTT TCAGTCGCTG AATGGAGCCT TCGGGGATTA 
GTGGACTGCT TCATAAAAAA AGGTAAGACA AAGGCCGAAT AGGATGGGGT AAGAGTGAAG 
AGTGCTATCT TCTGGAGTCT CACCAAAACT GGTCATGCTA TCGCAGGAAG TATGATTCAT 
CCAGCTAACG CTATATTGGC TGCTTTGCTG GGTTATCTGG TCAAAGGGAG CAACGCCGAG 
TCGCACTACA CCTTGAAGTA CCGACAATCG AAACCAGGAG GGAATGCTGT GCGCAGGGCT 
ACCAAACTTC GAGGAATGAG GCACTTGAGC ATCAACAAAG GACGCACTCT TGCCATATTG 
AAAGATAGAA CACAGGCTTT GGCACCTAGA GGAGGAGAAA AGGTAAGTTC TCTGGTTCAC 
TGCTTCGGGA ACTGTCCAAT GTCTCACTCC TCATTTCGAA ATAGGGTCGC AACTTCCGTT 
CTGGTGCCAA TGGTATCAGT GGTAGAACCA AAAGCAATGG TCCAGCTTTC AGCGAATGGC 
CTGTAGACGA CGATCCGCTT ATTCCAGAAC CTGAAGTCAC AATGACGGGC GAGGATCGTC 
CCAGTTCAGA CGATGGGCTA GTGATCACAG GAGACGATGT CATCTCACCA ACCCCAGCAC 
CAAAACCTGA AAGCTCTCCC AGCAACGAAG GTGTGAACGT GAGTGGCCCC ACGCCCAGTG 
ATGGCGGCAT TTCGCCTACC AATGCCGGTG AAAACTCTCC AAGCAATGAA AGCGTAAACG 
TGAGCGGCCC CACACCCAGC GGTGGCGGCT CTACTCCTAC GAATGCCGAT GAAAACTCTC 
CTAGTAACGA TGGCATAAAC GTGAGCGGCC TTGCGCCCAG CGGCGGTTCT GCTCCAACGA 
ATGCCGATGA AAACTCTCCC AGTAACGACG GGATAAACGT GAGCGGCCTT GCACCCAGCG 
ATCGCGTCTC TACACCTACG AATACCGGCG AAAACTCTCC CAGCAACGAC AACATCAACG 
TGTCTGGTGT ATTGACGCCT CTAGACGACG ACGAAAACTC TATCAGCAAC GATGATATCA 
ATGCAAATGT CCCTCAAGAC GACGAGGTCG ACTATTCTCC CAGCAATGAG GGAATGGGCA 
TTGATCGCAG CGGCTTTCCC GCTGGTGGCG GCGGCATTGC GGGCATTCCA CCTTTGGAAG 
GTATGGAGTC CGAATTCGGC GACGATGTCT TTAACCCTCC AACGAATGAA GACTATGTAC 
GCGCCGGAAA CGTCTAA 

 

Protein sequence

MERVTSNASQ APSVQSDGSQ TGGAWGTMGG GPGDGFQSGP GGSVQPNPNN STTTSTAFAS 
SQPSPETPAP YSPYPPGSGS VTRFAPSSTL SPYPTQATPY YGGAPTTPAL YPDTPMAASS 
YAARSAHAYG TASSQSLPQS QAPPPPQGAA SSYASRSAQA HASRDGSVSI HTGQSHAYSG 
APVRNIPPLV GGSYASRSAH AYQSQPQPSA AYGPSTSSPS PPSGGLPGTY ARGNPPMNVT 
GGTYGSYAPQ QPQISNPQPQ PNDGAQSNYN TAAQPNSTLP PPTTQNPPPG STTSVHSRSH 
VNNNNNSAPI TPQAQAAQQR MLTDASRKVQ EHAYYMRQAM DERNLPVALD RAAHMVGELG 
GPPHGHHHTT HTATGPTNTG LSASLTPKNY YELYMRALEE MPALEDYLLN LTNPTMYNTE 
PTIEIVASPQ HLRRAPYTMT ELYDCVQYCP RVVSRLYLQI TAGSAWIRSG GDADVCWVLN 
DLVQAVKCEQ NPTRGLFLRH YLLTALKDKL PDTPAPHHPS TPHLETIVSE EELADDETKS 
HDDNDNLDVG QTAAPVPVGT VKDSYEFILN NFMEMNKLWV RMQHLPGDGR SKEVRRRRAR 
ERNELRVLVG TNLVRLSQLE HVTSKIYGEV ILSQILEHIV TTGEPLSQAY LMDCLVQAFP 
DEYHIETLPI LLNVCPRLRD KVNIRTILQG LMDRLANYLA EEELLDESDT NQVKKALARD 
SFRLFEDCVQ KVYNARGPKL TSREVIRLQS ALLQFSLKCY PGNLDQVSTC LGLCSSALRQ 
ANASYDPSDA TRASIIRPLD DVSVAELEKL LSIPLDSLAL KVLQLEHFNG LIRFLPWTSR 
RQVAIKMLEA VDKAGAPPTN LDEIEELFSV IEPVIRNPNN TASGISRPQP QPTHMANTAS 
LMAGLGVTQT DAPSFSQSSF NDNDHSSAAA PSPELAREDA LVAKLIHLLD HEDTDVIFAM 
LKIAREHINL GGTKRASRTL VAVVFACCRL GRRIFDTENS NDESLPIEYK EDGSTAMAKD 
GSGDDDIPKE QHECNDSDGP KENNDDDRDD SPREKDIENK DDSISESKKV DIPQKTAETE 
SETKSMSETK SMSKTKATSS RNVFVFIQDT LSMIGRANAE VGIKLYLEVS LIADLLAKRS 
SEFSAISYEL MTQAFALYEE SVSDSKVQYR CVSRMIGTLL SVVSLSKEDY EGLITKTAQF 
SAKLLKKADQ CELVAQCAYL FYPVDASNNA SKYSNPQRAL ECLQRSLKLA DACTSANAGN 
VGLFVDLLEH YVFFFEKKNP VISHSYITGL VSLIKEHFNT LSDDSGVAQA KTHFAELVRY 
IKAKKSNDSS SELFSPVQLE IAHSSMEELG ASLRGLVDCF IKKGSMIHPA NAILAALLGY 
LVKGSNAESH YTLKYRQSKP GGNAVRRATK LRGMRHLSIN KGRTLAILKD RTQALAPRGG 
EKGRNFRSGA NGISGRTKSN GPAFSEWPVD DDPLIPEPEV TMTGEDRPSS DDGLVITGDD 
VISPTPAPKP ESSPSNEGVN VSGPTPSDGG ISPTNAGENS PSNESVNVSG PTPSGGGSTP 
TNADENSPSN DGINVSGLAP SGGSAPTNAD ENSPSNDGIN VSGLAPSDRV STPTNTGENS 
PSNDNINVSG VLTPLDDDEN SISNDDINAN VPQDDEVDYS PSNEGMGIDR SGFPAGGGGI 
AGIPPLEGME SEFGDDVFNP PTNEDYVRAG NV