| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_33478 |
|---|
| Symbol | |
|---|
| ID | 7203875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011671 |
|---|
| Strand | + |
|---|
| Start bp | 1031761 |
|---|
| End bp | 1033047 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002186172 |
|---|
| Protein GI | 219113177 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00955149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTGA CAATAACAGA TGGAGATCCA AAAGAGTACA GGACCTTTGT AGATGCAATA
CCAACTTTCT ACCCTCTTTG CGAACACAAG CTTTGTCACT GGCATCTACT GTATCGCAGT
AATCTCATGA AGGTGCAGAC TGGAAAATGT GGAGTTAAAG CTACTATTCT ATTCCGCGTA
GTTGTTCTTT GGATTGAGAG CTGGATGACC AAAATTGAGA CACAAGAGGA ATACGAACTT
TCTAAAAGGC TCTTGGCTGA TTGGCTTGCA ACCCCCGAAG CTATTGATGT CAAATTGGGT
GGTATGGGGC AAACTATTGT ATCGCAAATT AATGCGTACA TGACACTGTC ACTTTTTCCT
CATGAACAGC GCTGGGCTAG ATATCGCTAT TTATACACAC AAGCATTCAA CACATCTGCA
AGCTTGTATG CCGAGGCAGA AAATAGTGCT TTAAAACGAT GGGGCGACGG GGTCAGGCCA
AGCTTTTCCG TACCAAAAGC AACTCAGGTT ATAAACGAAG GGACACAACC TAGGTCAAAG
AAGAGGCATC AAAAAGCTGT TTACAATTTA AATGCTGCCA AGACGAGAAA GCCTGCCTAC
TATGCAAACA TTGGGGATTT AGTGGATTAC ATTCAAGATT CTCTTTCCAA AGATTTTGAA
GCAGCTGCTT CATTTGTGCT CTTCCGTCCA AATGCAGACC AGTTTTGGGT CAAGCAAGCC
ACTTGCAAAA GCAAAAACAC GGACATTCGG AAAATCAACA ACAGTAGCTA TTACAAGTAC
ATGATTCCGC AGTTTGAACG CACACGAATT GTGGAGCTTG TTAATATTGA TGGTACATTC
TATTTGGTGT GTAGCTGCGG AAAATTTCAG CGACAAGCTT CCCCATGTGC CCATCTTTAC
AAGGTTCTTG GTCAATCACC CACGTCAACC GATGTCTCTG TACGCTGGAC AAAGCACTGG
GATGTGTATT TGCACCGAAG TGGCCACAGT GACCTGTCAA AGCATTTGGA AGACCTGTAC
AAACAGGAGC GACCAGGTCC AGTATTTGTT GATAGTGGTC AGTGGGTGAT CGGAAAAGGT
GAAAAAGGGT CAAATTTTTT CGAAACTTCG CTTCCGTACA AGCCCCCTGT CATACGAGAT
TTTAATCGAT GGGCAGTGTC TTCGCAAACA ACTGGAGCTG ATTTGAGTGG GACCAAAAAT
ACCACAAATA TGTATTTTTC GAGTGGAATG GTGCAAGAAT CAACAAGCCT GTCCAGAGAG
CATGCATTCC AGGATTCATT GCATTAA
|
|---|
| Protein sequence | MHLTITDGDP KEYRTFVDAI PTFYPLCEHK LCHWHLLYRS NLMKVQTGKC GVKATILFRV
VVLWIESWMT KIETQEEYEL SKRLLADWLA TPEAIDVKLG GMGQTIVSQI NAYMTLSLFP
HEQRWARYRY LYTQAFNTSA SLYAEAENSA LKRWGDGVRP SFSVPKATQV INEGTQPRSK
KRHQKAVYNL NAAKTRKPAY YANIGDLVDY IQDSLSKDFE AAASFVLFRP NADQFWVKQA
TCKSKNTDIR KINNSSYYKY MIPQFERTRI VELVNIDGTF YLVCSCGKFQ RQASPCAHLY
KVLGQSPTST DVSVRWTKHW DVYLHRSGHS DLSKHLEDLY KQERPGPVFV DSGQWVIGKG
EKGSNFFETS LPYKPPVIRD FNRWAVSSQT TGADLSGTKN TTNMYFSSGM VQESTSLSRE
HAFQDSLH
|
|---|
| |