Gene PHATR_25893 details

Gene Information

• Locus tag: PHATR_25893
• Symbol: Lhcf14
• ID: 7204099
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 1216860
• End bp: 1217568
• Gene Length: 709 bp
• Protein Length: 195 aa
• GC content: 54%
• Product: fucoxanthin chlorophyll a/c protein, lhcf type
• Protein accession: XP_002186206
• Protein GI: 219113245

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TGAACCAACC ATGATGAAGC TTGCCCTTAT CGCCTCCCTC GTCGCCGGCG CTGCCGCCTT 
CGCCCCTGCT TCCAAGCAAG CGTCTTCCAG CGCCCTCAAG GCGTTCGAGA ACGAAGCTGG 
TGTCATCCAG CCGACTGGAT TCTTCGATCC CTTCGGCTTG TCCAAGGGTA AGGACATGGC 
GACCTTCGAC CAGTACCGTA CCGCCGAACT CAAGCACGGA CGCGTCGCGA TGCTTTGTGT 
CATCGGATAC GTTGTCCCAG AATTCTACCG CTTTCCTGGT GATATCGCCC CGGGTTTGAA 
ATTCGCTGAT GTGCCCAATG GTGTCGCTGC TTTGAGCGCC ATTCCCGCCC TTGGCTGGGC 
CCAGATCTTC TTCTTGGTCG GTGCCGTCGA CTACTGGGGT GTACTCGGTG ACTTTGAATA 
CGGAAAGCCC GACCTTGATG CCGATACTTT GGCCAAGCGT CAAACCCAAG AACTTCAGAA 
TGGACGTCTT GCTATGCTCG CCACCCTCGA ACTCCTCCGT CACGATTCCC AGAACTACGT 
CTCACCCGGA TTTGATGGCT TGGACAACCT CATCACCGGT CTTCCCTTCC TTTACTAAAA 
TGTTGAATTT GGATGTCTCG CTAGAAAAGT GGAGCCGCAT AGTAGTGGAT CCCTCATCAA 
CTCTTAAAAA CGATTTCTAG TAGACATGGT TGGTTTGTTT CGGCCCTTT 

 

Protein sequence

MMKLALIASL VAGAAAFAPA SKQASSSALK AFENEAGVIQ PTGFFDPFGL SKGKDMATFD 
QYRTAELKHG RVAMLCVIGY VVPEFYRFPG DIAPGLKFAD VPNGVAALSA IPALGWAQIF 
FLVGAVDYWG VLGDFEYGKP DLDADTLAKR QTQELQNGRL AMLATLELLR HDSQNYVSPG 
FDGLDNLITG LPFLY