Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATR_18475 |
Symbol | EF-1 |
ID | 7203973 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011671 |
Strand | - |
Start bp | 223682 |
End bp | 225603 |
Gene Length | 1922 bp |
Protein Length | 439 aa |
Translation table | |
GC content | 54% |
IMG OID | |
Product | translation elongation factor, EF-1, alpha subunit |
Protein accession | XP_002186303 |
Protein GI | 219113439 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00280729 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TCGTTTCGGT GCTCTCGCTT CGCGTACGGG CGGGCGGTCC CCCCCAAGCA GCGAGAGGAG TCCGCAGCGT CATAGTTGCA TTCCGGGGCC CACTCGCGTT GTTCACTCTC TCGTCTAGTA GAGAAACTTC CATCGGATCG TATCATAATA TTGTATCGTA TAATATCACG TAATCATGGG AAAGGAAAAG GTTCACATTA GTTTGGTCGT CATTGGACAC GTCGATGCCG GTAAGTAGTG AGAGAATAGA TACGGAAAGA GAAAGGGTCA TTCTCCCGTT GGACACATGC ACGCACACAC AAGGCGATTG GAATTGGTTT TACTGTTGAG AGAATAAGTC TGCTATCACC CATGTCCACG GATCGAGGTT CCTTTTGACT GCCTGCCTGC CGAATGCGCC GTTCAGCTTC GAGAGTACTA TGCTCGGTAC CTACGGTCGT CCACGTCCAT GCGGCTTTCG TGATACGTCA CGGGAGACAC TCACCGTTGC CTTATTTCCT TGCGATTGAT GTACAGGCAA ATCCACCACT ACTGGTCATT TGATCTACAA GTGTGGAGGT ATCGATAAGC GTACCATTGA AAAGTTCGAA AAGGAAGCCG CCGAACTCGG CAAGGGATCC TTCAAGTATG CCTGGGTCCT CGATAACCTC AAGGCCGAAC GTGAACGTGG AATTACCATT GACATTGCGC TCTGGAAGTT CGAGTCGCCC AAATACTCCT TTACCGTCAT TGACGCGCCC GGACACCGTG ATTTCATCAA GAACATGATC ACCGGAACTT CGCAGGCCGA TGTGGCGGTC CTCGTCATTG ACTCGTCCCA GGGTGGATTC GAAGCCGGAA TCTCCAAGGA CGGACAGACC CGCGAACACG CGCTTCTCGC CTACACGCTG GGAGTCAAGC AGATGATTGT CGCCATGAAC AAGATGGACG ACAAGACCGT CAAGTACGCC GAAGACCGCT ACACCGAAAT CAAGAACGAA GTCTCCGCCT ACCTCAAGAA GGTTGGTTAC AAGCCGATGA AGATCCCCTT TGTCCCCATC TCCGGATGGG AGGGCGACAA CATGGTGGAG AAGTCCACCA ACATGCCCTG GTACAAGGGA CCTTACCTGC TCGAAGCCCT CGACAGTGTC ACCCCGCCCA AACGTCCCAC CGACAAGGCT CTTCGTCTCC CCCTTCAGGA TGTCTACAAG ATTGGTGGAA TCGGAACAGT CCCGGTCGGC CGTGTCGAGA CCGGCGTTAT CAAGCCCGGT ATTCACGCCA TGTTTGCCCC CTCGGGTATC ATTGCCGAAA TCAAGTCCGT CGAAATGCAC CACGAGTCCC TCCCCGAAGC AGTCCCCGGT GATAATGTTG GTTTCAACGT CAAAAACGTG GCCGTCAAGG ATCTGCGCCG TGGTTTCGTC GCTTCCGACT CCAAGGCTAG CCCCGCCTCG GGTGTTTCTT CCTTCGAGGC CCAGGTCATT GTCATGAACC ACCCCGGTCA GATCTCCAAC GGATACTCTC CCGTCTTGGA TTGCCACACC GCCCACGTTG CCTGCAAATT CGCCCTCATC AAGGAAAAGA TGGATCGCCG CAGTGGAAAG GTTTTGGAAC AGAACCCCAA GTTCGTCAAG ACCGGAGACG CCTGCATTGT CGATCTCGAG CCTACCAAGC CATTGTGCGT GGAGAGCTTT ACCGATTTCC CCCCGCTCGG TCGTTTCGCC GTTCGTGATA TGCGTCAGAC CGTTGCCGTC GGCGTCATCA AGGCCACCAC CAAGGAAGAA GGTGGTAAGA AGAAGAAATG AATGCGGGAG TGGACCGCGA CGATCCGTCC GGAAAACAAT ACTAGGTGCT ATCACAGGGG CGCGTTTTGG AGAGACGTTC TGCGGAAACA CGAATTTAGA ATACGTAACT AACATATAAA CTGGATAGCC CTCGCATCGG AA
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Protein sequence | MGKEKVHISL VVIGHVDAGK STTTGHLIYK CGGIDKRTIE KFEKEAAELG KGSFKYAWVL DNLKAERERG ITIDIALWKF ESPKYSFTVI DAPGHRDFIK NMITGTSQAD VAVLVIDSSQ GGFEAGISKD GQTREHALLA YTLGVKQMIV AMNKMDDKTV KYAEDRYTEI KNEVSAYLKK VGYKPMKIPF VPISGWEGDN MVEKSTNMPW YKGPYLLEAL DSVTPPKRPT DKALRLPLQD VYKIGGIGTV PVGRVETGVI KPGIHAMFAP SGIIAEIKSV EMHHESLPEA VPGDNVGFNV KNVAVKDLRR GFVASDSKAS PASGVSSFEA QVIVMNHPGQ ISNGYSPVLD CHTAHVACKF ALIKEKMDRR SGKVLEQNPK FVKTGDACIV DLEPTKPLCV ESFTDFPPLG RFAVRDMRQT VAVGVIKATT KEEGGKKKK
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