| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_54101 |
|---|
| Symbol | |
|---|
| ID | 7197201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 680008 |
|---|
| End bp | 681616 |
|---|
| Gene Length | 1609 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177983 |
|---|
| Protein GI | 219112463 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.644826 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAAA CTGACAAGCC AACTATCGTA GAAGCCGGTG AACCTGTAAG TATTGAAGAG
GCCTTTGCCG CACCAGAACT GTGCGTTTGG CAACAATATC TGACTCGCTT GTTTGGACAG
GTTGAATGGA AGCAGTACAG TACGTACAGT ATTAAGACCG ACCCCGACCA AGATGATAAG
GCTACAGAAA TCAAACTGTG CAGCTTTGCC CGGCCCCACA TGCGAGCTTT CCACTGTTCT
TGGTGGTGTT TTTTCATTGC CTTCTTCATT TGGTTTGCCA TCGCCCCCCT TCTCTCCGAA
ATCAGAGACG ATATTGGCAT CACCAAACAG GATGTTTGGA CTTCGTCGAT TGTCGGAGTC
GGCGGAACAA TTTTGATGCG CTTTATTATG GGACCCATGT GTGATAAATA CGGTGCTCGT
ATTTCTCTTG ATTCTGTCGT TCGCTTCTAT TCCTACGGCA TGTACTGGAT GCATGTACTG
GATTCGTGAA CAGCGCCACC GGACTCGCGG TCTTGCGTCT GTTCATTGGT GTTGCTGGTT
CTACCTTTGT TCCTTGCCAG TATTGGTCGA GCCGTATGTT TTCGAAAGAA GTCGTTGGAA
CAGCTAATGC TTTGTGCGGT GGCTGGGGAA ATCTGGGTGG TGGAGTCACA CAGCTTGTCA
TGGGATCTGC CCTCTTCCCG CTGTTCAAAA TTTTCTTTGA CGGCGACTCA GAAATGGCCT
GGCGAACAGT TTGTGTTATC CCAGCCATTA TTGCCATGGC ATCTGGTATT ATTGTGTATC
GTATCAGTGA CGATGCTCCG AAGGGAAACT ACGTTGATAT GAAGAAGCAT GGTACCATGC
CTGAAGTCTC AGCTGCTGCC TCATTCCGTT CAGGAGCATT GAACCTCAAT ACATGGGTCT
TGTTTGTACA GTATGCGTGC TGTTTTGGAG TGGAGCTGAC TATGAACAAT GCCGCGGCTC
TGTATTTTAA GGACGAGTTT GGTCAATCGA CAGAATCTGC TGCTGCAATT GCTTCCATTT
TTGGATGGAT GAATCTTTTT GCTCGCGGTC TCGGAGGCTT TACAAGTGAT AAGGCCAACG
CCAAGATGGG AATGCGCGGA CGTCTTTGGG TACAAACTAT TTTTCTTGCG CTCGAAGGTG
CCCTTGTTCT GGTATTTGCT CAGACTGGAT CGCTGGTTGG AGCCATTGTT GTCATGATTT
TCTTCTCCTT GAACGTCCAA GCCGCTGAAG GCGCTACTTA TGGAATAGTT CCCTATGTCG
ACCCCGCCTC TACTGGATCC ATTTCCGGTA TCGTGGGAGC TGGAGGTAAC ACTGGTGCCG
TCTGCTTCGG ACTCGGATTC CGTCAGCTCA GCTACGAAAA AGCATTTAAC ATTATGGGGT
ATTCCATCCT TGCGTCAGCC TTCATGTCAG CTTTAATCAA CATAAAGGGG CATGCAAGTA
TGTTCTGGGG TAAGGATGAA ATTATCGAAA AGGGAATACT TGCTGTTCCT ATGCCAGAGG
CTGAAGAAGA GATCGAAGCC TAGAGTCTCC TGGTTGATTT TGTCCATTTC CCCCGACTAT
TTCCTTCAAC ATCTTATTCT TAAAGTTACT TATTTTCTTT TCTACACTA
|
|---|
| Protein sequence | MSETDKPTIV EAGEPVEWKQ YSTYSIKTDP DQDDKATEIK LCSFARPHMR AFHCSWWCFF
IAFFIWFAIA PLLSEIRDDI GITKQDVWTS SIVGVGGTIL MRFIMGPMCD KYGARISLDS
VVRFYSYGIA TGLAVLRLFI GVAGSTFVPC QYWSSRMFSK EVVGTANALC GGWGNLGGGV
TQLVMGSALF PLFKIFFDGD SEMAWRTVCV IPAIIAMASG IIVYRISDDA PKGNYVDMKK
HGTMPEVSAA ASFRSGALNL NTWVLFVQYA CCFGVELTMN NAAALYFKDE FGQSTESAAA
IASIFGWMNL FARGLGGFTS DKANAKMGMR GRLWVQTIFL ALEGALVLVF AQTGSLVGAI
VVMIFFSLNV QAAEGATYGI VPYVDPASTG SISGIVGAGG NTGAVCFGLG FRQLSYEKAF
NIMGYSILAS AFMSALINIK GHASMFWGKD EIIEKGILAV PMPEAEEEIE A
|
|---|
| |