| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50740 |
|---|
| Symbol | |
|---|
| ID | 7197023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 1322340 |
|---|
| End bp | 1325201 |
|---|
| Gene Length | 2862 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178119 |
|---|
| Protein GI | 219112735 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTTGAAAGAC TGTGCCTGTG CGTTCATCAA GGAACCACTG CCCAGATCGA AGTCCCCCTG
GCGCAAACGA AAGCCCCTTC ATCAATCAAC CAGCTGGTTG ACGTACACGA AAGAATTGGA
AAGGAAACTC ACGAGACCGG GTAGTTTTCG TGGTCTGACG GCCGAACAAT GGTTTCATCC
TCCAAATCAA CATGGATGAT GGCGGGGGCT TGCCTTATTT TGATGGCATT TCAGGTGCGT
TAAAGCTTAA CCTGTGTATT CATTAAAACG TGTGGTAGTC GATGTCTGGT GACATAGGGA
AAATTGGTGC GGCGGCTACT GTGGACTCCC GAAAGATTGA CTCGTTTATT CCAGGATATC
TTTCTCACAA AAGTGGCTTC TTATCGCATC CGTGTTTTCA TTCTGTAATA TTGTGGGACA
CAGGTCCAAT CATTTACGTT CGTTCCGGCA ACACGAGCAA CATCGACAGT CAAACGGGTT
GCCCCGGCCT TTATGAGTGC CGTCGCTGAC GACAAATCGG AAACATCCGA GACGGAAGCG
GCGGCACGCG CTCGTCTCGT CATGGAAGCC GAGGCCGCCA TGAATGGTGG CAGTAGTAAG
ATTGGCATCA AAGACACCAA ACTTATGGAT CTGGGTGGTA GGCCGTTTCC GTTGTCCATG
ATTGTTGGTC AGGATTCCAT CAAACAGGCC TTGTTGCTAT CGGCAATTAA TAATCGTATG
GGTGGGGTAG TAATTTCGGG AGGCAAGGGG ACTTCGAAGT CTGTCATGGC CAGAGCTCTG
CATCAACTGC TACCTCCGAT TGAAATCCTT AAGGATTCTG CCTTCAATAT TGACCCCGAA
GGTGAATTTG GACTCGATGA TTTCACTCGT ACTGAAATCG ACAATGGCGG CACTCCGTTG
GCGGACCGCG AGACGGAAAT CATTCCGTGT CCCTTCGTGC AAGTTCCGCT TAACGTGATG
GAAGATCGTT TGATAGGAAG TGCCGATTTG GAAGAAAGTG TCAAATCGGG CAAGACGGTT
TTTGCTCCTG GCTTGTTGGC AAAGGCACAT CGAGGAGTTC TCTACGTCGA CGATATCAAT
CTCCTCGACG AAGAAACAGC CAATATCCTG TTGAACGTTG TCTCCGACGG ATATGTCCTT
GTTGAGCGTG AGGGTATATC ACTGCGATAC CCTTGCCGTC CGTTATTGAT TGCTACCTTC
AACCCGGACG AGGGAGAACT CCGTGACCAC TTGCTTGATC GCATCGCAAT TGCGCTTTCG
ACCAACGCTG ATCGCTTGGA TATTGGACAG CGCGTAGACG CCGTCGAAAG TGTACTAGAT
TTCGCTAGTT CCGGAAAACA AAAGACCGAC AAGGCAGAAG TTGCTCTGCA GGAGGCTATC
GACAACGAGG ACGATCTCAA AACAGCCATC GTTTTTGCTC ACGAATACAT CAAGGACCTG
AAGGTTGCGC CTTCGCAGAT GCAGTACTTG TGTGAAGAGG CCATCCGCGC CGGGTGCCAG
GGACATCGTG CTGAAATTTT TGCCTGTGAA GTGGCTCGTG CGAGTGCCGC ACTGGAAGGT
CGCCAGGTAA CTAGTGAGGA TCTGCGTCTG GCTGTCAAGC TTGCGATTGC TCCCCGTGGA
ACCTTTATAA ATACACCGAT GGATCCGGAC GAGATGATGC CCCCGCCACC GCCACCTCCG
CCGCCGCCAC CGCAAATGGA CGACCAAAGT CAGGATCAGG ATGAAGACCA GGAAGATGAC
GATGAACAAC CGGATGAAAA AGAAGACGAG GAGGAAGACG AAGATCGCGA AGATGAAGCC
CCTGATGTAC CGGAAGTACC ACAAGAGTTC ATGTTCGACA TTGATGCGAC CCCAATGGAC
CCAGATCTCA TTGACTTTAC TAGTCGGGAA CGTAGCGGCA AGGGAGGAGG CCGTGGTCTC
ATTTTTTCGC AGGACCGTGG CCGTTACATC AAGCCCATGT TACCGAAGGG CAAGGTAATT
CGTCTGGCTG GTAAGTTCAG TGATCAAAAT GTTTCCTTGG AATAAGAAGC TGTACTATGT
ATCTTATACT TGCATGACAT TGCTTGCAGT TGACGCAACT CTCCGTGCGT CTGCTCCTTA
CCAAAAGTCA CGTCGTGAGC GCGCGGTTGG TACCTCAAAG GAGGGGCGTG GGGTCCACAT
TCAACAGTCG GACGTGCGCA TCAAGAAGAT GGCACGTAAG GCAGGTTCAT TGATTATCTT
TGTCGTGGAC GCTTCCGGAT CGATGGCTCT CAACCGCATG AATGCCGCTA AGGGCGCGGC
CGTCAGTCTC CTGACGGAGG CATACCAAAG CCGTGACAAA ATCTCACTCA TTCCCTTCCA
GGGAGAAATG GCCGATGTTC TGCTACCTCC CACGAAATCC ATCACCATGG CTCGGCAACG
GCTCGAACAA ATGCCTTGTG GAGGAGGCTC TCCACTAGCT CACGCACTGC AATTGGCAAC
GCTCACCGGT ATTAACGCCC AGAAGAGTGG GGACGTCGGT AAGGTTGTGG TCGTATTGAT
TTCCGACGGT CGAGCGAACG TTCCCCTTTG TGTGTCCATG GGCGAAGAAT TCGACCCAGA
ATCAGACGAG GATTCCAAGG ATGGCAAGCC CAGTCGAAGT TATTTGAAGG ACGAAGTATT
GGCGTGTGCC AAGCGACTGG GATCCCAAGG AGGCTTCAAC TTGCTTTGTA TTGATACGGA
AAACAAGTTC ATTTCGACCG GTTTGGCCAA GGAAATTGCC GATGCCGCTT TGGGCAAGTA
TCACCAGATT ACCAAAGCCG ATGGGAAAGC GATCGCCAGC GTGACAAGCC AAGCGCTGAA
CCAGATTAAA TCCAAGTAAA GATTTGACCA AATTGTCGTC GT
|
|---|
| Protein sequence | MVSSSKSTWM MAGACLILMA FQVQSFTFVP ATRATSTVKR VAPAFMSAVA DDKSETSETE
AAARARLVME AEAAMNGGSS KIGIKDTKLM DLGGRPFPLS MIVGQDSIKQ ALLLSAINNR
MGGVVISGGK GTSKSVMARA LHQLLPPIEI LKDSAFNIDP EGEFGLDDFT RTEIDNGGTP
LADRETEIIP CPFVQVPLNV MEDRLIGSAD LEESVKSGKT VFAPGLLAKA HRGVLYVDDI
NLLDEETANI LLNVVSDGYV LVEREGISLR YPCRPLLIAT FNPDEGELRD HLLDRIAIAL
STNADRLDIG QRVDAVESVL DFASSGKQKT DKAEVALQEA IDNEDDLKTA IVFAHEYIKD
LKVAPSQMQY LCEEAIRAGC QGHRAEIFAC EVARASAALE GRQVTSEDLR LAVKLAIAPR
GTFINTPMDP DEMMPPPPPP PPPPPQMDDQ SQDQDEDQED DDEQPDEKED EEEDEDREDE
APDVPEVPQE FMFDIDATPM DPDLIDFTSR ERSGKGGGRG LIFSQDRGRY IKPMLPKGKV
IRLAVDATLR ASAPYQKSRR ERAVGTSKEG RGVHIQQSDV RIKKMARKAG SLIIFVVDAS
GSMALNRMNA AKGAAVSLLT EAYQSRDKIS LIPFQGEMAD VLLPPTKSIT MARQRLEQMP
CGGGSPLAHA LQLATLTGIN AQKSGDVGKV VVVLISDGRA NVPLCVSMGE EFDPESDEDS
KDGKPSRSYL KDEVLACAKR LGSQGGFNLL CIDTENKFIS TGLAKEIADA ALGKYHQITK
ADGKAIASVT SQALNQIKSK
|
|---|
| |