| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43374 |
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| Symbol | |
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| ID | 7197119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011670 |
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| Strand | + |
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| Start bp | 277490 |
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| End bp | 279514 |
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| Gene Length | 2025 bp |
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| Protein Length | 617 aa |
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| Translation table | |
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| GC content | 54% |
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| IMG OID | |
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| Product | 9-cis-epoxycarotenoid dioxygenase |
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| Protein accession | XP_002177588 |
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| Protein GI | 219111673 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0989754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTTCGCCCTC GGTCAGAGGC AACACAACAC TGAACATAAG GTCAAGACAG CAAATCTTTA
CCACGGTATC TTGACTGTGA AACCGAGAAG ATTTCCAGTC GGTGCTTCGA AGAATCCCAG
TTTTCTAGTT GAACCTTGCT ATTGCATTTA TTTGCTCCGC ATATCTACAG CATGGTTCTT
TCCAGACTCG TCAGTTGGAC GAGTGTTGCA GTGTGGTTAA TTACTCAGAA CTTCTCCAGT
TCCGGTATCA GTGTAATGCT AGCAGATGCC TTTAGTCCCG TGATGTTGAC CACCAGTCGC
ACGGACGTCG CCTTCCAGCC GACGCTCCAC GCAACGACGA GTCCCGACTC GGTTTCCGTG
CGTAAGATTC AGCGCGAACG CGAGCGTTCG GTACGCTCGT ACCACGATAC CGAGGCGTGG
AATACGTTGT TTGTGGCCGT TCCCGAACGA AGCACGCCCG TACCGTACGA TACCAGCGCT
GGTGGTAGTC ATGCCAACGA CGTTGCGCAA AACTTCCGCA CCGCCAGGGC TGCCCCGTTG
CCGAGCAATT TCCCGCCGGG GTGCTTGCTG CGTCTCGGTC CCAACGGAGC CCCGCAGAAC
GAAGGATTCT TTGACGGCGA CGGTATGGTA CAGTGCATTA CATTTCCTCC AAGCACTGAC
CGTGAGCATG TCGGGATGTT TTCGTGCTCG TATGTTGATA CCAGGGGTCG CCAGCTAGAA
GGCGAACGCC AGAAAGTCTT TTTGGGGACA CTTGGTGCTG TCCCTCGTGG CTTGCCGTTG
CTCTTCAACG TACTTTCCAA TATGCTAACG TTCCGTACGT TACAAGGACA GAAGGATACC
TGTAATACGG CGTTGGCAAC GCACGGGGGC CGCGTCCTGG CCTTGATGGA GCAGTGCCCG
CCGGCCGAAA TTGCCATTGG CCGGGACGGA CGCATATCTA CCGTGCAAGC GAACTGCAAT
CTGGACGGAG CCATCCCGTT TGCGCCAATT ACTGGAGGAT CACTCAGCGC CCACGGAAGG
ACCTGTCCCG AAACTGGTGA ACGGGTACAC GTTTCTTACA GTAGCGGCAA TGCTCCCTAT
GTGCGGGTCG ATACGTTCGC ACCAGACGGC TGGAATTTGG TGCGATCGGT TGGTGTAAAT
GTTCCGTGTG CGACCATGTT ACACGATTGT GCTATTACGG AAAATTATGT AGTGGTGCTC
GACTTTCCGC TCACACTCCG GACGACACGG TTTCTAGCCG ATCAGTTCCC CGTCGAGTAC
GAACCTTCAT ACGGGGCTCG CATAGGATTG CTGCCACGGC ATACCACTGA TGCAGACGAT
TCGGGCACCA TTTGGTTTGA CTGTGCACCA GGGGTGATAT TGCATCTGGT CAATGCATAC
GAAACGAACG ACGGCAAAGT GATTGTGCAG GGTTTGCGGT CGGAACCAAG CACGTCGCAA
GGATATTTGG AGGCCTTTTC GCCCAGCTTT TTATACGAGT ACGAATTGGA TCTTGTCTCG
CGACGTACGT CCCGGGAAGG TTGCCTGAAT CCGTACGAAA TTGTCGAGTT TCCTATTCTT
GACGAATCTC AGAACGGCAA GGTAGCGCCT CACGTGTACA CCATCGGCGT CCGATCGATC
GGTGGACCCC TGGCGACGCA CCAACAACCC GTCATTGGTT TAACACTGGA CAGCGTTGTC
AAGTTTAATC TTGTCAACGA TACCGAGAGT AGTACAAAGG GTGACGTGCT GGGCAAGTTT
GTCTTGCCCG ATCGATGGTT TGCCGTATCG GAGCCTACGG TGGTTGCCAA AACGGACGGA
ACCGGGGGTG AGTACGTCTT GATAATTGCC ACAGTCGTGC CGGAGGGCAG TGACTGGAAG
CAAGTTGAGG CACTCAAACC AGAAAACGCA GATGAATTGA CTTCGCATGT ATTGGTGTTG
GATGGAGACA AATTGGACGA CGGACCGGTC TGGATGCGGG AAATGCCGCA TCGCATTCCG
TACGGTTTGC ATTCGTTGTT TGTTCCGTGG GAACTGATGA AATAA
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| Protein sequence | MVLSRLVSWT SVAVWLITQN FSSSGISVML ADAFSPVMLT TSRTDVAFQP TLHATTSPDS
VSVRKIQRER ERSVRSYHDT EAWNTLFVAV PERSTPVPYD TSAGGSHAND VAQNFRTARA
APLPSNFPPG CLLRLGPNGA PQNEGFFDGD GMVQCITFPP STDREHVGMF SCSYVDTRGR
QLEGERQKVF LGTLGAVPRG LPLLFNVLSN MLTFRTLQGQ KDTCNTALAT HGGRVLALME
QCPPAEIAIG RDGRISTVQA NCNLDGAIPF APITGGSLSA HGRTCPETGE RVHVSYSSGN
APYVRVDTFA PDGWNLVRSV GVNVPCATML HDCAITENYV VVLDFPLTLR TTRFLADQFP
VEYEPSYGAR IGLLPRHTTD ADDSGTIWFD CAPGVILHLV NAYETNDGKV IVQGLRSEPS
TSQGYLEAFS PSFLYEYELD LVSRRTSREG CLNPYEIVEF PILDESQNGK VAPHVYTIGV
RSIGGPLATH QQPVIGLTLD SVVKFNLVND TESSTKGDVL GKFVLPDRWF AVSEPTVVAK
TDGTGGEYVL IIATVVPEGS DWKQVEALKP ENADELTSHV LVLDGDKLDD GPVWMREMPH
RIPYGLHSLF VPWELMK
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