| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43370 |
|---|
| Symbol | |
|---|
| ID | 7197407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 264240 |
|---|
| End bp | 268511 |
|---|
| Gene Length | 4272 bp |
|---|
| Protein Length | 1258 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177898 |
|---|
| Protein GI | 219112293 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGACCATGGG AGGTGCTATG CCAATCTCGA CCATTAACCA ACATCGAAAG CTCTCAATTT
GACACATCCC TACTGGAAGT TGTTTTCTCC ATGAGGACAA CTTCAAATAA TGATAGAGCC
AGTAACGGGC AGAACAAAAG GCAGCCTTAC GGTGCAGTTC CTGCTTTCGA AGACGCAGAC
TTGCTGGAAG CAGAAGGGAA TGGTTTTGCT TCAAATTGTG AACGACTCAA AACATTTCCA
CCAGATACGC GTCGCACGTG GAAGGCGAAA TTAACGACAT ACGTGGCGAT TGCAATGGCG
CTGATGTCCA TTGTGCTCTG CATGGGGATA ATTCTCAACG TTGTACTGGG AGGTACTTGG
GGTATGGAAA CCATTGACAA CGAGAAGAGC CAAGCTACTC AAGCGAGACC TAGCAGTACC
AACACGAAAA CTCTGCACTT GTACGACGAG CTTGGTCGGT ATATTTTGGA AGATTACGAC
GCCCAGCCGC CCTTTTCAGA CTTTTTGCCA GCTTTGGCTG GTTATTTTGG CAAACCTTTG
TACGCATTTT ATATCAATCG GGGTCAGGGT ATCGCTGCAT TTGGTGTGGA GTCGAAAGAA
TATCCCATTA TGGAATTCCA TTCCGCCAAT GTTGCATACC AAAATACCGC TTTGTTGGGC
TTCCGTACCT TCATCCAAGG ATCACGCCAG AAGAAAGACC AAGACTCCTT CTTCGTTGAG
CCTTTCTCGC TTTTGCAAAC ACGATTTCCG AATATACCAC TGCACCACAA CGACATGGAT
AAGTTATTGC CTTCTTCTAC CACACCGAAG CGGTATATGT ACGTGGGATC TAACGAAATG
CAAATTCGCG AAGTGGATAC TGCTCACAGA CTAGAAACCA ACGTGACGTA TTTCGTACTT
CCGGAGGAAG ATTTTGGATC GTTCGTCAAA CGGACTACAA TTACCAACAC TGACGCTAAG
GAAAGTCTCA CATTGTCGTT TCTAGACGGG CTCGCGCAAA TTCAGCCCGC CGGTGGCGAA
ATGGAAAAGC CGCTAAAGAC GATTGGACGA ACATTGCAAG GATGGATGGG AGTGTACTCG
CCGTACGATG ATTCCGATGG AATGATGAGA ATGCCTTTTT TCCGGCTGTC GACGCAACCT
AACGATTCCG CATCCGTTGT TGTACAAAAA GCTGGGCACT GGTGTCTCTC CGTCTTAGAA
TCTGACAATG ATTCGACACT CTTACCTATC GTTTACGATA CGTCAAAAAT TTTCGGGCAA
GACACAAGTT TATTGCATCC TGTTGGGTTG TCCAACAGAC CAATCAGCGA AATTCTGAAA
GAAAAGCAAT ATGGGCGCGC CAAAACTTCC TCAGCTTTCG CTGCCGTGGA TCATATCAAG
CTGGCTCCGG GCAAGTCCGT GACGATCTCT ACTTTCTTCG GTAAGGCAAA TAATGTGCTG
GACATTCCCG TAATTTCCCG CAGAGTATTG CAACTTGGTT TTTCCCAGTA CAAGGTGATG
AGGACCCGAG AAATTATTAA GCAAATTACG GCCGTAGTGG AAACCACTAC ATCTCATCCG
CTGTGGGACG GACACGTTCA GCAAATGTTT CTTGACAATG CTCTCCGAGG TGGTGTTCCC
TCTATTTTGG GCGAAATCGA TGACGATGCT AGACTACGCA ACGTAGACGA AGATCCACGT
CTAAAAACAT ACCACTTGTT TTCCCGAATT CACGGGGATT TGGAACGTGA CTACAACGGT
TTTGTGATCA AGCCAACGTT TTTTTCCGAG GTAAATGCTG CGATGACCTG TGGCGTGGCA
GCGTTTTGCT GACTTTCTCG GCGAAATACC CGCACCTTTC TTCTCACGTT CTAACGGTAA
CGCTTTTCGT ATAGGGACCA GGAAACTTTC GAGACATCGC ACAAAATCGA AGAAGCGATG
TACTTTTTTA CCCTAGAGTC GGGTCAACCA ATTTGAAAAC GTTCTTGTCC ATGATCCAAG
CTGACGGCTA TAATCCTCTG TCAATCGAGG CCAGTACATT TACCATAAGT GACGTTAAAG
CCTGCTTACA GATTGCTACA GCAGCTGTAG GACCAGCTGA TGGGCATCGG GCACAGCGTG
AAGCCTTAAC CGACATACTT CACAGTGGAC CATTTCGTCC CGGACAACTC TTTTTACTGA
TGGAGGAGCA ACATATCGAT ATCATCATTG CACAACAAGA ATTTATCGAT ATTGTTGCCG
CCGCGGCGGA CCAACATCCG TAAGTCTCTT AATTTAGATA TGCGCGCATA GTTGCGCACG
TCATATCTGA CTATTCTCTA CCTTTGTGAA AACAGAATTG CGGTGTATAA AAGCGGATTC
TGGGCCGATC ACTGGACGTA CTACATGGAC CAAATCCAGG CCTATCTAGC AATCTATCCA
GACTGGGAAG AGCGTATTTT GTTTGATGAA CGGCTCCCGT ACTTTTTTTC ACCTGCGTTT
GTGAAGCCTC GACACGAGAA GTATGTGTTG TCGGTTTCGT TTGATGGCAC CGGTAAGCAT
GTCAGACAAC TGGATGCGAC AGAAGATAAC GACGAAGAAA AAAGAACTTA TATGGCTGAA
TACATCGAAA ATAAGACGGG ATGGTACGAC TTGCAAGCCA ACTGGCAGCA TACAGCTTTA
GAGGGCGGCA TTTTTCACAG CTCTCCTATG GCGAAACTGC TTTTGCTGGC CACTCTAAAA
TTCGCTTCTC GAGATGCGTA CGGCATGGGC GTTGAATACG AAGGTGGGCG TCCCGGTTGG
GATGATGCTA ACAATGGTCT TGTTGGAATG CTGGGTAGTG GCATGCCAGA GACTTACGAG
CTTGTCGTAC TTTTGCGATA TATTCGCTCT GCGCTTCACC GTTTTGATCG CGATCTTTCG
GTACCAGTCG AGCTGGTCGA CCTTATAAAT TCGATCAATA AGGCGCTAAA AACACTTTCC
AGCGAACGCG GTGATGAAAG AAACAAAACA GAGTCGCTCG GAAGTGAAGT TCCTTCTTCT
TTCTTCAAAT ACTGGGATGA GGTTGCGACA GCTCGAGAAT TGGTAAGTTG GAATATATCT
GTATGCTGTA CCTGAAAGCC ATTCCGCTCA ACCCGGTTGT TTGTTGCGTC GGCAGTATCG
CGATCAAACC AAGATCCTTT TCCAAGGCCT GACGGAGGTA CTTTCCTCCA AGACGATATG
TTTAATGATT GACACTTGGC TAGGTGAAAT TGGACGAGGT ATTGAGCGCG CCATGTATTT
CGGCTCCCGT GGTTTTAACG ATAACGGTAC ATCTGGCATC ACGCCCACAT ACTTTTCGTA
TAACGTTACC AAATGGGAAA AGACTAAAGC GATCAATACC AACGGCCATC CGTTCGTTCG
GGCAAAACAG TTTACACTAA ATCTGTTTCC ATTGTTTCTT GAAGGCCCAG TGCGAATGAT
GAAAACATTA GATTCGGATG AAGCCAAACT CGTTTATGAC AGGGTAAGTT CGTCGCAACT
GCGGGACAAC GACCTTAAGA TGTATTTGAT TTCAGCCAGT CTGAAAGGTC AAAGTTTGGA
CACGGGTCGC GAAATGGCGT TTGCTCCCGG TTGGTTGGAA AATAATTCGG TATGGTTGCA
CATGTCGTAC AAGTTTTATT TGGAAATGCT ACGGCACGAG ATGTTCGAAG CTTTCTTCGA
GGAAATCACT TCGGGTGGTA TGCTGCCATT TATGGATCCG CAAGTATACG GTCGGTCGTT
GATGGAGTGC TCGTCATTCA TTGCATCGTC GTCCTTTGAA GACCCGGCTA TCCGAGGACG
TGGGTTTTTG GCCCGCTTGA GTGGGTCAAC TGCAGAGTTT TTGAGCATGT GGATCTTAAT
AATGATTGGA CCGCATCCCT TTTACATTGA TAAGACAACG AATCTGGTAC AAATGCAGCT
GGTACCTGCC TTGCCACGGT GGCTGTTTGC AGAGCAAGCG GATGACCAGA AACCAGTCAT
TCGATTCAAG CTTTTTGGCT CCATTGAGGT AACGTACGTC CATGATAGGG GAGAGGAAGA
TTTATACCGT ACGTTGCCTT CGAGATACGT CGTCGGATTG CGAGATGGGT CCACATTTAA
AGTGGAAGGT CCATCAATTT CGAATGACTT GGCCGATAAA ATCCGTCGAG TAGCTTTTGT
TGCGTCTATT GACGTTTACT TCGAGCATTG AAAAACTGAA ATATTGCTGC TGCTGTGAAA
AATTGAAAAA AACCAATGCT TTGGTGTATG TGAATTTCTA CAATTTAATT AGACGCTCAT
TTACAATTTC TA
|
|---|
| Protein sequence | MRTTSNNDRA SNGQNKRQPY GAVPAFEDAD LLEAEGNGFA SNCERLKTFP PDTRRTWKAK
LTTYVAIAMA LMSIVLCMGI ILNVVLGGTW GMETIDNEKS QATQARPSST NTKTLHLYDE
LGRYILEDYD AQPPFSDFLP ALAGYFGKPL YAFYINRGQG IAAFGVESKE YPIMEFHSAN
VAYQNTALLG FRTFIQGSRQ KKDQDSFFVE PFSLLQTRFP NIPLHHNDMD KLLPSSTTPK
RYMYVGSNEM QIREVDTAHR LETNVTYFVL PEEDFGSFVK RTTITNTDAK ESLTLSFLDG
LAQIQPAGGE MEKPLKTIGR TLQGWMGVYS PYDDSDGMMR MPFFRLSTQP NDSASVVVQK
AGHWCLSVLE SDNDSTLLPI VYDTSKIFGQ DTSLLHPVGL SNRPISEILK EKQYGRAKTS
SAFAAVDHIK LAPGKSVTIS TFFGKANNVL DIPVISRRVL QLGFSQYKVM RTREIIKQIT
AVVETTTSHP LWDGHVQQMF LDNALRGGVP SILGEIDDDA RLRNVDEDPR LKTYHLFSRI
HGDLERDYNG FVIKPTFFSE GPGNFRDIAQ NRRSDVLFYP RVGSTNLKTF LSMIQADGYN
PLSIEASTFT ISDVKACLQI ATAAVGPADG HRAQREALTD ILHSGPFRPG QLFLLMEEQH
IDIIIAQQEF IDIVAAAADQ HPIAVYKSGF WADHWTYYMD QIQAYLAIYP DWEERILFDE
RLPYFFSPAF VKPRHEKYVL SVSFDGTGKH VRQLDATEDN DEEKRTYMAE YIENKTGWYD
LQANWQHTAL EGGIFHSSPM AKLLLLATLK FASRDAYGMG VEYEGGRPGW DDANNGLVGM
LGSGMPETYE LVVLLRYIRS ALHRFDRDLS VPVELVDLIN SINKALKTLS SERGDERNKT
ESLGSEVPSS FFKYWDEVAT ARELYRDQTK ILFQGLTEVL SSKTICLMID TWLGEIGRGI
ERAMYFGSRG FNDNGTSGIT PTYFSYNVTK WEKTKAINTN GHPFVRAKQF TLNLFPLFLE
GPVRMMKTLD SDEAKLVYDR VSSSQLRDND LKMYLISASL KGQSLDTGRE MAFAPGWLEN
NSVWLHMSYK FYLEMLRHEM FEAFFEEITS GGMLPFMDPQ VYGRSLMECS SFIASSSFED
PAIRGRGFLA RLSGSTAEFL SMWILIMIGP HPFYIDKTTN LVQMQLVPAL PRWLFAEQAD
DQKPVIRFKL FGSIEVTYVV GLRDGSTFKV EGPSISNDLA DKIRRVAFVA SIDVYFEH
|
|---|
| |