Gene PHATRDRAFT_25172 details

Gene Information

• Locus tag: PHATRDRAFT_25172
• Symbol: Lhcf2
• ID: 7197087
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011670
• Strand: -
• Start bp: 135837
• End bp: 136579
• Gene Length: 743 bp
• Protein Length: 198 aa
• GC content: 52%
• Product: protein fucoxanthin chlorophyll a/c protein
• Protein accession: XP_002177870
• Protein GI: 219112237

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 0.992243
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTCGCGGTTG CCAGAAGTCA AGATGAAGTT TACCGTGTTT GCCTCCCTCT TCGCGTCCGC 
TGCTGCCTTT GCTCCGGCTC AGCAGGCTGC CCGCACTTCG GTCGCCACGA ACATGGCGTT 
CGAGAGCGAA CTTGGTGCTC AAGCACCGCT TGGATTCTAC GATCCTCTCG GCCTTGTTGC 
TGACGGTGAC CAGGAAAAGT TCGACCGTCT CCGTTACGTT GAAATCAAGC ACGGACGCAT 
CTCGATGCTT GCCGTTGCTG GATACTTGGC ACAGGAAGCC GGATGGCGCC TCGGCGGAGA 
CATCGCCCTC GATGGAACGA AATTCGCCGA TATCCCCAAT GGATTTGCTG CCTTGAGCGC 
AATCCCGCAG GCTGGGCTTA TCCAGATCAT CGCCTTCATT GGTTTCTTGG AGACCTCTGT 
CATGAAAGAC ATCACTGGAG GAGAATTCGT CGGTGACTTC CGTAACGGAT ATATTGACTT 
TGGATGGGAC TCCTTCGACC AAGAGACCAA GCTTCGCAAG CGTGCCATTG AGCTTAACCA 
GGGACGTGCC GCTCAGATGG GAATTCTTGC CCTTATGGTC CACGAACAGT TGGGAGTCAA 
CATCCTCCCA GGTGTTTAAT TTACTTGCTG GGTTAGGCCG TTTCTGGAAT AACATATTAG 
ATTCTAACTG GTTCGAAGCA TTGCGTTGCT GTAACATTCC CGTTCACAAA AATACAGAAC 
AGTCTAGAAG TTCGCGACGA CAT 

 

Protein sequence

MKFTVFASLF ASAAAFAPAQ QAARTSVATN MAFESELGAQ APLGFYDPLG LVADGDQEKF 
DRLRYVEIKH GRISMLAVAG YLAQEAGWRL GGDIALDGTK FADIPNGFAA LSAIPQAGLI 
QIIAFIGFLE TSVMKDITGG EFVGDFRNGY IDFGWDSFDQ ETKLRKRAIE LNQGRAAQMG 
ILALMVHEQL GVNILPGV