Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_18246 |
Symbol | EPSPsy |
ID | 7197471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011670 |
Strand | - |
Start bp | 915349 |
End bp | 916832 |
Gene Length | 1484 bp |
Protein Length | 483 aa |
Translation table | |
GC content | 50% |
IMG OID | |
Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
Protein accession | XP_002178032 |
Protein GI | 219112561 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.764746 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | CTCTGGTGAC GGTTGCTCCG ACACTTTCTA CCATGGTTCA GATTCAGTCG CTTACTCCGG TGGTGCTTAT CTTGTCGGCC CTCGCAGGAG CACAGGCGTT TACGACAGAC CGATTCGGCT CAATGAGATC GTCTCCATTG GCGCTAGCTA CGACTACTGG CGCTACCGAG ACCTTAACTG TCAAGCCGAT CAAGAGTCTT GATGGAACGG TGACCCTCCC TGGTTCCAAA TCTCTGAGCA ACCGCTGCCT TTTGCTGGCT GCCTTGAGCG AAGGCAAGAC GCGTGTCAAC AATCTTTTGG ATTCCGACGA CATTTGTTAC ATGCTGCAAG CCTTGGAACA ACTCGCGGTT CCTGTGGAAC GCCATTCTGA TGATTCTGTA ACGGTAACGG GAAAGGCCGG TCCGATCAAC TCACCTACTC CGGAAAAGGT ATGTGAGCTT TTTTTGGGAA ACGCAGGAAC TGCTATGCGT CCTCTAGCAG CTGCCTTGTG TATGGGCAAA GGAAAGTTTT TGCTGGACGG AGTTTCCCGT ATGCGAGAAC GTCCGATCGC AGATTTGGTT GATGGACTCA AACAGTTGGG AGCAGATGTG TCCTGTGTTG AAGAATCAGG ATGCCCTCCG GTCACAATCA ATGCAAATGG TTTGCAGGGT GGATGCGCCT CCATTAGTGG AAAGATGTCT TCGCAATTCC TTTCATCGTT GCTGATGGCT GCTCCATTAG TCGACGGTGA CATCAACATT TCCATCAAAG ACGAGCTCAT TTCTGCTCCA TACGTTGCTC TTACCATTGG TTTGATGAAG AAATTCGGTG TCAACGTTGA TATTGAGGGG GATATGGACG GTGCCCCTTC CTTCAAGATT GCTTCCTCCG AAAAATATAT CAGCCCAAAG TCTATCTTGG TTGAAGGTGA TGCAAGCTCA GCAAGTTACT TTGTGGCAGG CGCTGCGATA ACGGGTGGAA CTGTGACCGT CCGCGGATGT GGATCCGAGA GTGTACAAGG TGATGTTGCG TTTGCCAATG TTATGGAACA GATGGGCGCT ACGATCACCT GGGCTCCGGA AAGCATCACC GTCACACGAG ACCCGTCTGT GAAGCTCAAG GGCGTCGATG TGGACTGCGG AAAGATTCCA GATGCTGCCA TGACTTTGGC TGTAGCAGCT CTCTTTGCAG AAGGGCCCAC AACGATTCGG AATGTTTATT CATGGCGACT GAAGGAAACA GAGCGAATGA AAGCGATTGT GGCCGAATGT ACCAAGCTTG GGGCAATCGT GGAAGAGTTT GAAGACTATT GTATAATTCA CCCTCCAAAG GACAACATTA TCAACGATAA CGTACTGATT GAGACGTACG ACGATCACCG AATGGCTATG ACGTTCAGTC TGGTGGCGTG TGGGGGTGTG AGCGTCATCA TTAATGATCC CGGCTGCACG GGGAAAACAT TTCCAACATA TTTCGAGATG TTAGAAAGTA TCTCATCTCA CTAA
|
Protein sequence | MVQIQSLTPV VLILSALAGA QAFTTDRFGS MRSSPLALAT TTGATETLTV KPIKSLDGTV TLPGSKSLSN RCLLLAALSE GKTRVNNLLD SDDICYMLQA LEQLAVPVER HSDDSVTVTG KAGPINSPTP EKVCELFLGN AGTAMRPLAA ALCMGKGKFL LDGVSRMRER PIADLVDGLK QLGADVSCVE ESGCPPVTIN ANGLQGGCAS ISGKMSSQFL SSLLMAAPLV DGDINISIKD ELISAPYVAL TIGLMKKFGV NVDIEGDMDG APSFKIASSE KYISPKSILV EGDASSASYF VAGAAITGGT VTVRGCGSES VQGDVAFANV MEQMGATITW APESITVTRD PSVKLKGVDV DCGKIPDAAM TLAVAALFAE GPTTIRNVYS WRLKETERMK AIVAECTKLG AIVEEFEDYC IIHPPKDNII NDNVLIETYD DHRMAMTFSL VACGGVSVII NDPGCTGKTF PTYFEMLESI SSH
|
| |