Gene PHATRDRAFT_18049 details

Gene Information

• Locus tag: PHATRDRAFT_18049
• Symbol: Lhcf1
• ID: 7197088
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011670
• Strand: -
• Start bp: 137055
• End bp: 137720
• Gene Length: 666 bp
• Protein Length: 196 aa
• GC content: 52%
• Product: protein fucoxanthin chlorophyll a/c protein
• Protein accession: XP_002177871
• Protein GI: 219112239

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAAATTTGTC TGCCGTTTCG AGATATCATT CAAGATGAAA TTTGCCGTTT TTGCCTTCCT 
CCTCGCCTCT GCTGCCGCCT TTGCTCCGGC TCAGCAGTCG GCTCGTACTT CGGTAGCCAC 
CAACATGGCT TTCGAGAACG AAATCGGTGC TCAGCAACCC CTCGGATATT GGGATCCCCT 
CGGTCTGGTC GCCGACGGTG ACCAGGAGAA GTTCGACCGT CTCCGTTACG TTGAGATCAA 
GCACGGGCGT ATTTGTATGC TTGCCGTTGC CGGATACCTC ACCCAAGAAG CCGGCATTCG 
TCTTCCGGGA GACATTGACT ACTCAGGCAC CAGCTTCGAA TCGATTCCCA ATGGATTCGC 
TGCCTTGAGT GCTGTGCCTG GAGCCGGCAT TGCCCAAATT ATTGCTTTCA TTGGCTTTCT 
CGAAATCGCC GTCATGAAGG ACATTACTGG AGGAGAGTTT GTTGGCGACT TCCGCAACAA 
CTACCTCGAC TTTGGCTGGG ACACTTTCAG TGAGGACAAG AAGCTTCAGA AGCGTGCTAT 
CGAACTCAAC CAGGGACGTG CGGCACAAAT GGGCATCCTT GCTCTCATGG TGCACGAACA 
GTTGGGAGTC TCTATCCTTC CTTAAAAATT TAATTTTCAT TAGTTGCAGT CACTCCGCTT 
TGGTTT 

 

Protein sequence

MKFAVFAFLL ASAAAFAPAQ QSARTSVATN MAFENEIGAQ QPLGYWDPLG LVADGDQEKF 
DRLRYVEIKH GRICMLAVAG YLTQEAGIRL PGDIDYSGTS FESIPNGFAA LSAVPGAGIA 
QIIAFIGFLE IAVMKDITGG EFVGDFRNNY LDFGWDTFSE DKKLQKRAIE LNQGRAAQMG 
ILALMVHEQL GVSILP