Gene PHATRDRAFT_56484 details

Gene Information

• Locus tag: PHATRDRAFT_56484
• Symbol: LCYB
• ID: 7195976
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 578114
• End bp: 580309
• Gene Length: 2196 bp
• Protein Length: 659 aa
• GC content: 52%
• Product: precursor of cyclase lycopene beta cyclase
• Protein accession: XP_002176612
• Protein GI: 219109716

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00169655
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGCAAA GGTGGAATCT CGTGACGTAT TTATTCGTGG CGGTTGCCGC TTTGAAGTCG 
GCGCACTGCT TCTCTCTAAA CAGTCGGCGG CCCATCCGTC GAGGGTGGTC GACTACCGCG 
AATGTAGTCG CCCACAAAAC CCTACAGTCC ACCAGTAGTC CAATAAGTCC TCGGACGATT 
GTCAGTTCCT CACCATTAAC TCTATTTGCT ACCTCATCGA GCGGCATCGC TAGTGCTTCT 
GTTGATACCA CCATCGTTGA CGAAGTCTGC GATGTACTAG TGTTGGGTTC TGGCCCAGCG 
GCTCGGGCGA TTGCGAGTTT GCTATCGGCT CCGCAGCAAG GAGCCATGAA GGTCATTCTG 
GCTGATCAAA ACGTGGATAA GGTATGGCCC GCCAACTACG GTGTCTGGCA AGACGAATGG 
CAGTCCGTTG TGGACCGCTT CCAAGCCGCG GGTGTTCCGT TCGTGGGGGG CAACGTAGAC 
AACGCCATCG ATCGAGCCTG GAACGTGACG GACTGTTACT TTGGTGGATC GGTACGTAGT 
ACGACAAGGT GGACGCTTGT GGAAATCAAA AGGAGTATCT AGCGAGCGCC GGGATCGGCG 
GACGCATTGT GAGTTTTTTA TCTCATGCCT ACCAAAATGG TTCTCTTGCG CGTTTCCGTT 
CGCACAGTTT GACATTCCAA TGGAGGAACA AATGCGAGTC AATCGACCAT ACTACCGCGT 
CGATAAATAT GCTTTGCGCG ATTCGCTGAC AGGAAACGAG TACAAGATTG TGAAAGCAAA 
CCATATCAGC AAGGCAATTG GACCCAATTT GTACAGTCCG GCTGGGAGTC TAATGCACGA 
CGAAGACGGA ACCACCATCC AGTTGCGAAC GAAAGACGAC CAGTTTTTGA CTGTACGTTC 
GAAACTGGTA GTGGACTGTA CAGGGCACGA AACGAAATTG GTGCTTAGGG AAACCCGGCC 
GGAAAGCCAA CCACCCGGCT TCCAGATTGC GTACGGATGC TTGGTAGATG TGGACGAAAG 
CAACAGTCCC GATTTGTCAC GTTTTGGTCC CTACGACAAG GAAGCCATGA CCTTGTTCGA 
CTACCGAACT GATCACTTTT TGACTGAGGA GGAGAAAATC AAAGCCGATC GTGCGCCCAC 
ATTTATGTAC GCAATGCCAA TAAAGGATAA CCAAGTCTTT TTCGAAGAAA CATCACTCGT 
GGCGCGACCC GCCATGTCGT TCCAGGAATG CAAAGATCGT TGTTTCCGGC GCCTCGAATA 
CCTTGGCATT AGGGTGACCA AGGTACACGA AGAAGAATTT TGTTACATTC CGATGGGCGG 
GGCCTTGCCT GCGAAGGACC AACGCGTGCT AGCAATTGGC GGCTCCGCTG CCATGGTGCA 
TCCCAGTACC GGCTATCATA TCTGCCGGTG TCTCATGGGA GCCACCGATA TGGCAGCGGC 
TATTCAAAAG GAAATGTCAT ATTCTCCTGC GGCTCCTAAT CTAGATCGCG TTGCAGCTTC 
GGCATATGAC GCCCTGTGGT CACCTGAAAA TATAATGCAG CGTAATTTTG CGGTATTCGG 
TGGGGAATTC TTGATGAAGC AGAATGTCGT TGGTTTGCGC GGTTTCTTTG ACGGTTTTTT 
TCGCCTACCG ACCGAGCTAT GGGGTGGTTT CTTGGCCGGG TGGCCAGGCC TCCCCAATAA 
CGACAAACAC GAATCTTGGA TCGCGAGATT GTGGTACGGC ATGAATTTTA TCGTACGAAT 
TCCCCCTCTG GTCGCTGTGG ACATGCTGGC GAGCATTGCG ACGTACATGG TCACGGAAGG 
CGTTCCTTTG CCGCAATCTG TGACGCCGTT CTTTGGCAAG CCGGAATCGT ACGAATACAA 
ACGCAACGTG GACGGTGTCG GGGACGTGGC GGCCAAGAGT GAAGCTCGAC GAATGCTTCT 
GGAATCGGAG GTGGAGAAAG ACGTTCCGAT TGCCTTTAGT TCCACCGAGG ATGGTCGAAT 
TCTGTCGGAA AGCAAAGCAG GGATCTTGAG TCAATCGGTG CCGCAATTCA AATCCGCCGA 
GGTTGTCGAA GCTAAAAGGA AGGCGATCAC CGATGACTCT CGTTTGGACG AAACAATCGT 
GGAAGGTTTC CAGTAGGAAA ATATGTGTAT CGATCTACGA CTAGAGATCT GTACTTTATG 
CCGGTGATAA AATAAGGTAC CCAATGTTCG CGTACC 

 

Protein sequence

MVQRWNLVTY LFVAVAALKS AHCFSLNSRR PIRRGWSTTA NVVAHKTLQS TSSPISPRTI 
VSSSPLTLFA TSSSGIASAS VDTTIVDEVC DVLVLGSGPA ARAIASLLSA PQQGAMKVIL 
ADQNVDKVWP ANYGVWQDEW QSVVDRFQAA GVPFVGGNVD NAIDRAWNVT DCYFGGSFDI 
PMEEQMRVNR PYYRVDKYAL RDSLTGNEYK IVKANHISKA IGPNLYSPAG SLMHDEDGTT 
IQLRTKDDQF LTVRSKLVVD CTGHETKLVL RETRPESQPP GFQIAYGCLV DVDESNSPDL 
SRFGPYDKEA MTLFDYRTDH FLTEEEKIKA DRAPTFMYAM PIKDNQVFFE ETSLVARPAM 
SFQECKDRCF RRLEYLGIRV TKVHEEEFCY IPMGGALPAK DQRVLAIGGS AAMVHPSTGY 
HICRCLMGAT DMAAAIQKEM SYSPAAPNLD RVAASAYDAL WSPENIMQRN FAVFGGEFLM 
KQNVVGLRGF FDGFFRLPTE LWGGFLAGWP GLPNNDKHES WIARLWYGMN FIVRIPPLVA 
VDMLASIATY MVTEGVPLPQ SVTPFFGKPE SYEYKRNVDG VGDVAAKSEA RRMLLESEVE 
KDVPIAFSST EDGRILSESK AGILSQSVPQ FKSAEVVEAK RKAITDDSRL DETIVEGFQ