Gene PHATRDRAFT_53964 details

Gene Information

• Locus tag: PHATRDRAFT_53964
• ID: 7196010
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: -
• Start bp: 729829
• End bp: 733330
• Gene Length: 3502 bp
• Protein Length: 1006 aa
• GC content: 48%
• Product: probable calcium ATPase
• Protein accession: XP_002177149
• Protein GI: 219110795

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.379869
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAAACCTTGA AATCGATTGT CATCTCTTTC TGGCCTACAC ACCACACAAG AGTAACCACA 
GAACTTCTTA AGAAAAGGCC GTTGTTTTGT TAGATAGTAG AAATCCGGCT TCTTCGTTAT 
TCCTCGGTAT GGCAAGACCG TACCCCTATA CACGGTTGGA AGAATGCGCT TGGCAGCCGG 
AAGATGTGGC TCGGCATTTG GCGGCCCTTG CAAATGGGAA CTTCTCCGTC GATTCTTCGA 
GCACGCAGCT CCTTAGCCAC GGATGGTCGA CGCGCCAGAT TTCAACGTTA CGACTTGAAT 
TTGGGGCGAA TCGAATGCCA GGTGACGATG GCGACAAACA CAAGACGTTT ATGTCGCAAT 
ACACAGCGTG CGTCTCGCCC ATTTTCACGG CGCTCGTCTC TCAGTTGAAA GAGCCATTGA 
TTCTTATGCT ATTGGGTTCT GCCGCCGTTT CTATTGCTCT CGGAAACCAG TCGGAAGCAA 
TCAGCATCGC CTTTGCACTC CTTATCGTGT CCATGGTTGC AGCGGTTCAA GAATACCGAT 
CGGAGGCTGC TTTGGAAAAG TTGGCGACTC TCGTGCCACA CACATGTACA GTGCTACGGG 
ACGGCCAAGT TATCGATGGT TTCTTTGCGA AGGAACTTGT TGTTGGTGAT CTAGTACTAC 
TAGCAACTGG AGAGTAAGTT ACAGTTCTCG TTCTTTTTGG TTTTTGAAAC AACATGCATT 
CCAGCTTACT TCTGTTCCTT CAAGTCGCGT TCCCGCAGAC TGTCGTGTCG TCGACTCAGT 
AGAACTCATA TTAGACGAAT CCTCATTGAC GGGAGAGAAT CATCCCGTTG CCAAAACAGG 
TGAAGGCGTG GTGCTGGGAG CATCGCCGCC TTTGACACAG CAAAAGAATG TAGTCTTTGC 
AGGCAGTCTA GTTAATGCCG GACGTGGACG GGCTCTTGTG ATTGCAGTGG GAGTCTCGAC 
TGAGTTTGGG AAGGTGGCTA CTGAATTGAG TTCAGTTGCG AGTCGAAAGT CTCCGCTTCA 
AATTAAAATA GATGAACTGG GCCAGCGATT GGCTGGATTG AGTTCGATTG CAATCTCAAT 
CATCGCAATG CTGGGTTGGA TTCTAGGCCG ACCTTTCCTG GAAACCCTCA CAGTAGCTGT 
GGTAAGTTCT GGTAAGCGAG TTCTGAAGTT TTTGTCACGT TTGCCTGATA TTATGTTGCT 
TTTTGACTGT GTTCACAGAG TCTTGCCGTA GCCGCCATCC CGGAAGGCCT TCCTATCTGT 
GTGACAGTAA CTCTTGCACT TGGAGTGTTA CGTATGGCCA GAAGGAATGC AATCATTAAA 
AAACTCCCAG TAGTTGAGTC ACTTGGATGC GCAACTGCCG TAGCCTCGGA CAAAACTGGG 
ACGTTGACAC AAAATGAGAT GACTGTTCGG ACCTTATTCG CACTTGCTTA TCCTAAAGCC 
AAATTCGGAT TTACAGGTAT AGGGTACGGG TCCAAGTCGG GTAATTTGGT GTATCTGGAT 
GCTGACGGAT CGACTGGCCC AAAAGCTCCG TCCGGGAAAG TAACTTCAGA ATGCGACGAA 
TATGCTGCCC TGTCAGCTTT ACTCAATACG GCGTGCCTGT GCAACAATGC AACTCTTTTA 
CAATCGTTGG ACTCAGAGTT GTCGGAAGGT CATACTGGAG GTGCGCTGTC AGGTCAACCG 
ACAGAGCTTG CACTTCTAGT TGCAGCTGAC AAAGCAAATC TTGAGGATCC AAGAGCCCAG 
TATCACCGTT TACAGGAGAT ACCTTTCACG AGCGATCGTA AACGGATGGA AGTTCGTGCC 
CGTCCGGTTA GTGGACGACA ATGTTGCGAT GCATTTGCTG TCGCGTCGAA CTCCGTTACT 
TATTCAAGAA ATCGACATGG AGTGGGAGAT GGTAGCCTTT ACTTTGTCAA GGGCATGCCT 
GAAAAGATTT TAGGAGAGTG TTCGACATAT GGTCAATCAA ATGGGTCAGC AGAGCTTCTC 
GTAGAGGATG ACAGGGCCGA AGTGCTTCTT CAGGCTCGCC GGATGGCTGC TGGAGGGCTT 
CGCGTTTTGG CCTTTGCATA CGGGCAATCT TTAGGAGAGT TAGTATTCGC AGGGCTCGTT 
GGGATGGAGG ATCCACCAAG AGAAGGGGTG TGCGATGCTG TGCGCCAGCT ACGTCGTGGC 
GGGGTGAAAG TAATGATGGT GACAGGGGAT TCTAAAGAAA CGGCATTGGC AATCGCTCAG 
CGGTGTGGTA TTTTAGGCAG CGAAAATGGC GATACAGCTG TTGACGATAC GCTTTTGTCC 
TCTGAGACAA TTTTTACAGA TGATCTCGAG TTGGGTACCA GTGAGGCGTT GAGTGGAGCC 
GAACTCGATG CTATATCACC GCAAAACCTC GCGGAAAGTA TTTCTGGAGT CCGTGTTTTC 
TATCGGGTGG CTCCTCGTCA TAAGCTAGCA ATTGTCAGAG CACTTCAAGA GCGTGGTGAT 
ATAGTCGCAA TGACGGGAGA TGGAGTGAAT GACGCCACTG CGCTGAAAGG TGCTGATATC 
GGGATTGCTA TGGGATTGAA AGGTACCGAT GTTGCAAAAG AGGTATGCAG ACGTTTTCTG 
GGTGGTTTAT ATGAGAGGAG AGCGTTTTTG TCTCACCTGC GATTGACTCG TACAGGCCGC 
AGATGTAGTG TTGGCGGATG ATGATTTTAG GACGATTACA ATGGCAATTG CAGAAGGAAA 
AGGAATTTTT TTCAATATTC GATGTTTCTT GGCATTTCAG CTGAGCACGT CATTTGCTGC 
TCTAACGATG GCCAGTATTG CAACTGCATT TGGGTTACCA TCTCCTCTCA ACGCAACTCA 
AATCCTTTGG ATAAACATCT TGATGGACGG CCCTCCAGCT CAAAGTCTTG GGGTGGAACC 
CGTTGATGAA AAAATTCTTC GCGCGAAACC GAGAAAAGCG GATGAGCCTA TTGTTACACG 
GGCTCTTTTA TTGCGGGCTA CTAGCAGTGC TGCATTAATT GTATTTTTGA CGCTGAAAGT 
GTTTTCCAAT GAGCTTGATG ACGGAGCCGT AAACCGCCGA GATACGACCA TGACTTTCAT 
GATGTTTTGC AATTGCGACT TGTTCAACGC GTATGTTTGC CGATCTGCTG ACAAGCCTTT 
CTACAAAATT AACCTGTACA GCAATCCAGC GTTTCTCTGG GCTATAGGAG GTTCAGTTGT 
GGGACAGTTT CTTGTGGTGT ACTGGCTTCC GCTTCAGAAA GTTTTTCAAA CTGAAGCATT 
GACATTCTAC GATATCGCCT ACATTGTGTT GCTCAGTTCA ATGGTCTTGT GGCTCGATGC 
ACTGAGAAAG ACATTCTTCC CTAGTGTCTT TTGCGATGGA TACCACACTT CCCCTTTTGC 
GTCCAAGAAG ACAAGCCGTA GTGCTGGTCT AAGGCAACAC CACTCTTGGC TTAATTTTCG 
TCGTTTTGAC AAGAATAAAG CGGAGCAAGC TGCTCGCTGG GCACCGAAGG AAGCCAAGGC 
AAAAACGCTT CTTGCACTAT AG 

 

Protein sequence

MARPYPYTRL EECAWQPEDV ARHLAALANG NFSVDSSSTQ LLSHGWSTRQ ISTLRLEFGA 
NRMPGDDGDK HKTFMSQYTA CVSPIFTALV SQLKEPLILM LLGSAAVSIA LGNQSEAISI 
AFALLIVSMV AAVQEYRSEA ALEKLATLVP HTCTVLRDGQ VIDGFFAKEL VVGDLVLLAT 
GDRVPADCRV VDSVELILDE SSLTGENHPV AKTGEGVVLG ASPPLTQQKN VVFAGSLVNA 
GRGRALVIAV GVSTEFGKVA TELSSVASRK SPLQIKIDEL GQRLAGLSSI AISIIAMLGW 
ILGRPFLETL TVAVSLAVAA IPEGLPICVT VTLALGVLRM ARRNAIIKKL PVVESLGCAT 
AVASDKTGTL TQNEMTVRTL FALAYPKAKF GFTGIGYGSK SGNLVYLDAD GSTGPKAPSG 
KVTSECDEYA ALSALLNTAC LCNNATLLQS LDSELSEGHT GGALSGQPTE LALLVAADKA 
NLEDPRAQYH RLQEIPFTSD RKRMEVRARP VSGRQYGSLY FVKGMPEKIL GECSTYGQSN 
GSAELLVEDD RAEVLLQARR MAAGGLRVLA FAYGQSLGEL VFAGLVGMED PPREGVCDAV 
RQLRRGGVKV MMVTGDSKET ALAIAQRCGI LGSENGDTAA LSGAELDAIS PQNLAESISG 
VRVFYRVAPR HKLAIVRALQ ERGDIVAMTG DGVNDATALK GADIGIAMGL KGTDVAKEAA 
DVVLADDDFR TITMAIAEGK GIFFNIRCFL AFQLSTSFAA LTMASIATAF GLPSPLNATQ 
ILWINILMDG PPAQSLGVEP VDEKILRAKP RKADEPIVTR ALLLRATSSA ALIVFLTLKV 
FSNELDDGAV NRRDTTMTFM MFCNCDLFNA YVCRSADKPF YKINLYSNPA FLWAIGGSVV 
GQFLVVYWLP LQKVFQTEAL TFYDIAYIVL LSSMVLWLDA LRKTFFPSVF CDGYHTSPFA 
SKKTSRSAGL RQHHSWLNFR RFDKNKAEQA ARWAPKEAKA KTLLAL