| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43057 |
|---|
| Symbol | |
|---|
| ID | 7196250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 1927585 |
|---|
| End bp | 1932099 |
|---|
| Gene Length | 4515 bp |
|---|
| Protein Length | 1315 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177403 |
|---|
| Protein GI | 219111303 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATTCTT CCTCGTATGA TTTCCAGATG GAGTTTACAG GAATAGCTTC GCACACGCAG
CTGCCGCCGT CTCCGGAACT GAGAAGCGGC TCGTCGGATG GCTACCTTGG TAGCGACAGC
TTTTCCCTGG ATCCCGATCC ATCGACCGGG ACAGAAAGAA ATCCGAGGTC CAGGCTTGTT
TCGATCGCTC GATACAGTTC CTTCCAGCCT CAAGCTCTGG CATGCTCGCC TCCTCTTCCG
GTAATGTACT CCGAGAGTCA AAGCTCTTCC GGGAAACGTG GCGTTTCCTC TGCCTCGGCT
ACATTACTAC GACGGACTCC AACAGAATTG ACCGGAACTA CGTCGCTAGG CGCGCTTGCT
GGGCTACATG GAGTCGCTGT ATTCCGCGTA TCAAAGCCCC ATGAACCGCT ACTCGTGCTT
AAACATGCTA CCGGATTCAA TAGCACAAAT CGGACTCTCG GCAACGGCGT TCGCTCGCTT
TCGTTTCAAC CAGATTCATC GCAATCATTT TACTTAGCGG CTGCGCGAGG TTCGGGTGTA
CTTGTGTGGG ATGTGAGCGG TCACAGTTTA AGCCCTTTGT GGGGTCGACT TGAGATCGAC
GATGGTACCA CAGGAGCTGC TCGGCCACCG ATTACAAGTA TATGCTGGCA ACCCGTGACG
AACAATGCCC CATATTTAGC TGCTTCGACA GCGAAGAGCG CTTGTATATG GGATTTGCGA
GAGTCTGCAG TGGCTTCGAC ACACTTTAAA CCCAGTTTAC GATTTGGGAT ATCTCGGAAG
AATCTAGTTA CTGCGGCTCC GTATGTTCAG CTCGCTTGCT CAGGGCAGAA CGAATGCGCC
ATCTTGGATG CTGCCGGGAT GCTGCGGATC TTCGATATGC GCCTAACTGA CCGTAGTCGC
CTGTCGATGG GCGATTTGAG CAGCTTTGCA GCATTCAGTC ATGCCGGAGT GGGCGTAGCA
CATATGGGGA AAAGTCTTAG TAGCGAGAAT GCGAGATGGG TAGCATGGGG ACTCGACGCA
CCATCAGGCA GCGACGCTAC AGTAAAGGTC TGGTCAGAGA CAACCGGGAA CTCCCAGGAT
GTATCTGAAG TCGAAGGCAA CGCGTCGGAA AATTTATGGC TTACGGATAC ACCATCAGGA
CAAGACACGC CAATGGAGCT GGGGAAAATT TCGGACTATC ATCTCTCGGC ACAATGTACA
CTGCCAAACC TGGCATGCGC ACGGGTTTGT CCAATACCGA CAGAAGATAG TATACTCACG
GTGAGCCTTA CGAATAATGA AGGATTACGT TCGTGGAAGG CTGATCTCTG GAAGCTTACG
AATGATACAG GAACCCAAAG TATGAAACGC ATCGTGAGTT TTACTGCAGG GGAAGGGTCG
GACTATGGTA TTATGTCGAC GGTAGAAAAT GCCGATACAC TTGGGAATGT TTGCGCCTCG
GAGCTGGCCA TAGTCAATCC TCTTTCATCT ATAGGAGGCA CCGCTGCTTC ACTACCTGCG
CACAGTACAT TGATCCTTTG TAGCTTGACT GAGAATGGAT ATGTTACCAC GCATGTAAGT
TGTTGTTCTC GAAAGCCTAT TTTATACGAC AAAAAAGGTA TCTCCTCACC GTGTGCTTTT
GGGATGTAAA GTCTATACCT GAGGCTATAC CAGCGCAGTC AAAGTTGACC GAAGAATTAC
GAATTGGCAA TCCTCGCAGT TCGTTATTCC CCTCTCACTC ACACATACGA GTATTTCCAG
GTGAGCAGGA AATGATGGTA ACAGACGCGG CGAAAGCTTG GACCGATCCG ATTGAGCGCT
TGGTGCGGTT ACCAAGCGAC TATCTACCAG CTCAAAAAAA CGATGTTCAA TCTATTCAAA
CTTCAGGAAG CGGTCTTTTG GGCATTGACA TGGAAACGCC TTTTTTGTTT CATACGACAA
ATGCCTCAGT TTCAGGAGTT CCAAACAAGT CGTTGCCGGC GAACGCAAAG TCTTCCCATA
TTATCTCAGG CCCGCAAACT CAGGAGGACG GTACTCCGGT TGTGACAAGA GATATAGACG
CCGATCGAGT TCCTTGTCCT CGTTTGTGCG GTGCAACTTT TGGACAAGGA ATAGGCGGTT
TGTCGCTCTA TCGCAACGGT GACGTGAAAC AGATGTGGAC ATGGTACGAT CAAAAATCCG
AGGTTCGTAT TCGTTCTATT CCAAAGCTGG TCAACAGCCA ATCTCCAACC TCTCGCAACC
ACCTTTCGGT GAAACACTTT AAGGAGGAGA AGCCACAGCG AGAGTTCCCT AGGACTGTTC
GAGACCTTGT AGAAATGACT ACAGCTGCTA AAGAAGCACA ATGGGGTGAA CACAGCGAAT
CGGATATTTC GTCTACTAGC TTTCGAGTTC ACGGTGAGAG CTTCTTTGAA GAAGACTCAA
ATGGTTCCTC CGATAGCAAT GATGTACTTA AATTGGACGC CAGTGGCGAA GCCGAAGAGA
AGGCACTGAC GAATCTGTAT GACGCGCATT TCTCCGAATC TCGACAGCTT ACGCCAGCAG
CGGACGACAA CAATAAAAAG AGTAGTTTCG AAGGGCACCA GTCACAAAGA AAAGCTGTAC
TCATCGATCT GGGCTTTGGA GCATCCTCTG AAATGCTCTC CCCTTTGGTG CACGTCACAT
TTTCTTACGA TAGAATTTCT CTCAACCAGC AAAGCGCCTA TCTAGCAAGA AACTGGCTGC
TCGGTGAATG GAAGCCTCAG CAGCCGCTTA GTTTTTTGCT ATCCAAGCCA ACAGCGACTG
CTTCAGACGA GGGCAATACA GATCCATTGT TGGCTCTACA GGGAAATGAG AGCCCCCTTC
ACCTGGACTC TCTTGCTTTC CAGGATTTTG GTGAGTTTGT TGACTCTTTC TGGCCGGCAA
GGTATCAAAT TATTGACTCT TCGCTTTTCT TCAGGACGAG GCGATCAAGT CACGTCGGCT
TCTGATTTGC CACACTCTAT TCGTCAAAAA TCATTGGAGA TGTCGTCCCA GCCGCGGTCG
AGAATTCATC AGAGCGAGGA AGAACGAGGT GTTCGTGGCG GCGAATACAG TGTCAGACCC
GGTATGCAAG AGTCTATGGT TTTTCTGAAA AAGCTTTTTT CTCATCAACA AGATGGTATG
AAGTCTTTTC CGAGCTTGAT GTCGCCTCCA GACGGTCCTC TACGTACGTA CATAAAAGAA
AACGATTTTG TATTGATCAA AACGCTTCAA GAGAGTGTCT CTTAACCACG TCTTCCAAAG
TTCCCAAAAG GCGATCTCTG GCAAGCACCC GCAATCATGA GAAAATGGAG GGACATCCTG
AATCAGAGGG ACAAGGACGG AGTAAACTTG GTGTTTATTC TATCAATGTC GCCAACGCTG
GGCTAGATCT TGGCGAAGAT CATGGATTGA TGAGCATCAG AACCATTTGT GATCATAATG
CTAAAGTCTC GAGAAAAGCT GACGAATTTG AAAAGGCAGA AGTATGGGAC CTTTTGTGTC
AAGTGGTCGA AGGTAGGATG ATGGACAAAG GAAGCACATT CGATGGCTGG GGCGGACCAG
GTGGCGGGGC TTTAGGGGTC AATCTGGTTC AGAATATTTT CCAGTATTAC GAGTCACTTG
GAGATGTACA AATGCTCTCG ACACTGGTGT GCGTACTGCG CGGCGGATAC TCCTCGCAGA
ATATTTTGCG TCCCCGATGG TATTTGCTTC CTCGCGACCA AGAAGTGAAA TACGATACCT
ATATTCACCG ATATGGTAGC CTTCTATACT GTTGGGGACT CCTTTCTATT CGTGCTGAGT
TAAGGAAGCA TATGTCTGGA GCATTACCGT TTGATGTCTT TTCGGTAGGA GGAACAAATA
GTGATAACCA GTCGACAGGG ATTGCACTAG CTTTCATTTG CCCTCAATGC GGAGGTGAGT
CTGAAGTGGG CTACAACTAT TGTCGTGTCT GCGAAGACTA TGCATTTCGC TGTATTATCT
GCGACAACGC CGTCAGAGGA TTATTTGCTG TTTGCGACAG GTATGTCCCC TAGACTCTTG
AAGGACGGCA AGTAATGCTT TTGCAGGTCT TACATATTTT TCTTCGCATA GCTGTGGGCA
TGGCGGACAT GTTGGACATA TACAATCTTG GTTTGAAAGA AATTCTCAAT GCCCTTCGGG
ATGCGGCTGT AAATGCATTT TTGGACAAAA AGCACTAGCT TTGAACAACC CTAAAGTTAT
TGCAGCACAA CACCGCCCCA TGACAACTAG AGCAGACACG GTGAGATCCC TTGGCTCATT
GTGAAGCAAT GACTGCTGCG AAAGTCTGGT ACATGTTATA CTTTCATAGC ACTGCTTGAA
TAATCTGTTC ACGGTTGAAT GATGGGAAGA GCATATTCCG GTTCAGATCC TTCTCTACCA
GAGTTAGGTA GCAACATTTC ATGCTTTTAC CTTGTGAAAC AATGCGAATG AGCTGCCCTG
CCGCATAGTC ATCCTCAACC TAGTCTGACT GGCTAAATCA AGATACATGT ATAGATAGTC
GCCTCTGTTA GAACT
|
|---|
| Protein sequence | MHSSSYDFQM EFTGIASHTQ LPPSPELRSG SSDGYLGSDS FSLDPDPSTG TERNPRSRLV
SIARYSSFQP QALACSPPLP VMYSESQSSS GKRGVSSASA TLLRRTPTEL TGTTSLGALA
GLHGVAVFRV SKPHEPLLVL KHATGFNSTN RTLGNGVRSL SFQPDSSQSF YLAAARGSGV
LVWDVSGHSL SPLWGRLEID DGTTGAARPP ITSICWQPVT NNAPYLAAST AKSACIWDLR
ESAVASTHFK PSLRFGISRK NLVTAAPYVQ LACSGQNECA ILDAAGMLRI FDMRLTDRSR
LSMGDLSSFA AFSHAGVGVA HMGKSLSSEN ARWVAWGLDA PSGSDATVKV WSETTGNSQD
VSEVEGNASE NLWLTDTPSG QDTPMELGKI SDYHLSAQCT LPNLACARVC PIPTEDSILT
VSLTNNEGLR SWKADLWKLT NDTGTQSMKR IVSFTAGEGS DYGIMSTVEN ADTLGNVCAS
ELAIVNPLSS IGGTAASLPA HSTLILCSLT ENGYVTTHSK LTEELRIGNP RSSLFPSHSH
IRVFPGEQEM MVTDAAKAWT DPIERLVRLP SDYLPAQKND VQSIQTSGSG LLGIDMETPF
LFHTTNASVS GVPNKSLPAN AKSSHIISGP QTQEDGTPVV TRDIDADRVP CPRLCGATFG
QGIGGLSLYR NGDVKQMWTW YDQKSEVRIR SIPKLVNSQS PTSRNHLSVK HFKEEKPQRE
FPRTVRDLVE MTTAAKEAQW GEHSESDISS TSFRVHGESF FEEDSNGSSD SNDVLKLDAS
GEAEEKALTN LYDAHFSESR QLTPAADDNN KKSSFEGHQS QRKAVLIDLG FGASSEMLSP
LVHVTFSYDR ISLNQQSAYL ARNWLLGEWK PQQPLSFLLS KPTATASDEG NTDPLLALQG
NESPLHLDSL AFQDFGRGDQ VTSASDLPHS IRQKSLEMSS QPRSRIHQSE EERGVRGGEY
SVRPGMQESM VFLKKLFSHQ QDGMKSFPSL MSPPDGPLLP KRRSLASTRN HEKMEGHPES
EGQGRSKLGV YSINVANAGL DLGEDHGLMS IRTICDHNAK VSRKADEFEK AEVWDLLCQV
VEGRMMDKGS TFDGWGGPGG GALGVNLVQN IFQYYESLGD VQMLSTLVCV LRGGYSSQNI
LRPRWYLLPR DQEVKYDTYI HRYGSLLYCW GLLSIRAELR KHMSGALPFD VFSVGGTNSD
NQSTGIALAF ICPQCGGESE VGYNYCRVCE DYAFRCIICD NAVRGLFAVC DSCGHGGHVG
HIQSWFERNS QCPSGCGCKC IFGQKALALN NPKVIAAQHR PMTTRADTVR SLGSL
|
|---|
| |