Gene PHATRDRAFT_43024 details

Gene Information

• Locus tag: PHATRDRAFT_43024
• ID: 7196830
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 1825350
• End bp: 1827354
• Gene Length: 2005 bp
• Protein Length: 576 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002176853
• Protein GI: 219110203

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000321984
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TACGAAGCAA CTTGATTCTT CACATACGAT GGTATCTGAC CGATCTGGAT GCACATGATC 
TGTAAAGAAT GGAACATTCA TAAAAAGGGA GGCCTTTGGT AGACTTGATT GCTTTCGAGT 
TTTATTCACC GTCGAAAGAA ATCTTGCTAT CCTGACCATC ATCCCCTCTG GATATGCAGA 
CTGCATAGAG TTCCGGAATT ATCTTACGCA ACAACCTTCC TCCGGAGCCA AGCTAGTGTC 
TTTGCTGCTG TTCACTCGAA TCATTTTTGA CATCATGGGA AACGAGGTGT CTTTGCAATG 
GTTTCGGGGA GATGCGATCA AACTGGAAAC GGAGCTCCGA AAGCCTACTT CAGATACAGA 
AGACTCATAC CGTTCTTTTG ACGAAAATGA TGACGACGAA GAAGACTCCG ATTATCCGCG 
ACAAATATCT CTCGATCCTT ACCGATTGAG TCCAATCAAG GACCACGCTC AAACATGTTG 
GGCGGGATGG ATTTTACCAC CATTGGCACC TCCCTTGCTG CAAAGATGTA AGTCCTTGCC 
AAAGATGGTT CCCGTTCTCT ATTCGGATGC GAGCCTGGAA AGTATCGAAC CGGTAGACAT 
GTCGTGGTCG ACCAGTTCTT CAATGTTTCA CAAAACGAGT CAGGCTCAAA ATTTTGCAAA 
AGAGCATTGC GGTTCTTCCG ACGAAACTTC CACTTCCTCG GGAAGTGAAG CAGAAGAGGG 
AGCGGAGCCT CTACATCTGC AACTCCATGA CAGCCGAATT TCAGTCTCTA CTGCGTACCC 
GACACGGTCA CCCGCTTTGG ACCAAGGCTC CTTTTACGAA CGACATGGTT CTCTGGCCAA 
AGCTCTACAA TCGTACCAGA GTAGTTTGCA AGAGTTGTCA GATTTGAGCC TTCTTGCTGG 
AACTCATTAC CGTGTGGGGG TAGTGCAATG GAAAAAAGGT GCATATGATG ACAGTTTGCA 
CAGTTTCAAA CAATCTCTCG CAACCTACCA TCTAAAGGCT TGCGCCGGAT CAGATGAAGA 
TATTGCACAG GTGTACTTGT CCATTGGACG GGTCTACGCT TCCAAAGGAA AACATCGAAA 
AGCGAAGAAG TCATTCAAGC TTGCCTTACA ATTGATAGTG CTGGATGAAG TGCTTGATCA 
TAACTGTGAA GTAAGCAACC GTGTCCAAGT TCTTTACGCA AAGATTTTGT TGGCTTACGG 
TTCCATCTTG GTTGAAGATT TTGACTACGT GACGGCAACC AACCTCTTTC ACGACGCACT 
CGCGATTCAG AAGGAAGTGC TGGGTGATAT GCACGTTGAT GTAGCTTCAA CGTTGCTATC 
GTTTGGTTCC CTCAATGAGA AATTGGAAAA GCTCGAAGAC GCCAACACAT GTTACTGGGA 
AGCTTTTCAG ATTTACCGAT CCGCGGATTC TTCGGCAGTT GATATGGGTG TCACACTGAC 
GAGTATCGGT TGGATCTACT ATCAGCAGCA CAACCTGGAA AGTGCGATGC ACGCCTACCA 
GGATGCTTTG GATTTACTTC TGCCCAAACT TGGCGACGAT CATCGAAACG TAGCTTCGGT 
ACGGATTCAA ATAGGGATGG TGCATATCCA GAAAAATGAA CTGGATCTGG CCCTGGAGCA 
GTATAAGGAA GCTCTCCGAG CTCAACGTAT CGCGCTGGGT GACGAGCACA AAGACGTTGC 
GATTACCTTG AGCTTGATTG GCGCCACATT GGAGAGCCAA GGTCGCTTCA ACAAGGCCAT 
CGAGTTTGTG GACCGCGCGT TGTGTATTCG TAAAAAAGAT TTTGGTCCTT CACACTTGCA 
CGTGGGCACA ACGTTGGCCC AACTCGGTGA ACTGTACAAA ATTGCCGATA GACCCGAGGC 
GGCCGCCCAG TGTCTCAGAG ACGCAGTGAG TGTGTTTCGT GCCAACCAAG TGGATGGCAA 
GAATCCTTGC CTTGTCCAGT CCAAACGTGC GTTGCGAAAC TTACGCCGCA GCCGCCTTCC 
TGCTGCTCCC AACGAGACTT TGTAG 

 

Protein sequence

MGNEVSLQWF RGDAIKLETE LRKPTSDTED SYRSFDENDD DEEDSDYPRQ ISLDPYRLSP 
IKDHAQTCWA GWILPPLAPP LLQRCKSLPK MVPVLYSDAS LESIEPVDMS WSTSSSMFHK 
TSQAQNFAKE HCGSSDETST SSGSEAEEGA EPLHLQLHDS RISVSTAYPT RSPALDQGSF 
YERHGSLAKA LQSYQSSLQE LSDLSLLAGT HYRVGVVQWK KGAYDDSLHS FKQSLATYHL 
KACAGSDEDI AQVYLSIGRV YASKGKHRKA KKSFKLALQL IVLDEVLDHN CEVSNRVQVL 
YAKILLAYGS ILVEDFDYVT ATNLFHDALA IQKEVLGDMH VDVASTLLSF GSLNEKLEKL 
EDANTCYWEA FQIYRSADSS AVDMGVTLTS IGWIYYQQHN LESAMHAYQD ALDLLLPKLG 
DDHRNVASVR IQIGMVHIQK NELDLALEQY KEALRAQRIA LGDEHKDVAI TLSLIGATLE 
SQGRFNKAIE FVDRALCIRK KDFGPSHLHV GTTLAQLGEL YKIADRPEAA AQCLRDAVSV 
FRANQVDGKN PCLVQSKRAL RNLRRSRLPA APNETL