Gene PHATRDRAFT_42998 details

Gene Information

• Locus tag: PHATRDRAFT_42998
• ID: 7196811
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: -
• Start bp: 1741535
• End bp: 1743807
• Gene Length: 2273 bp
• Protein Length: 642 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002177362
• Protein GI: 219111221

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.133724
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AAATCCATGG GAAGGTGTCA ATCTTCTTCC CTTTATTGAT ATTAAGCTTT TGAAAGACAC 
AATTACTGCT CATTGCCCTG ATAATAAACT AACTGTAGAT CAGCGGCGAC GGAACGCGCG 
GGGGAAAGTG TTTTGTTACC GCTACGATAT ATCTTGCACG GACACAGTTG AGTCGCCGAA 
CAAAAATATT GGTCTCCCGG ACATTATTGG ATCGTCGTCT GCGGTCAACG TAGTTGAAGA 
GCTTGAGTCG ACTGGTCTCG CTTTTATGCC TGAGATTATC TCTGGTACAC AAATACCGTA 
TCCTGGCTTT CCTTCGTTGA GCGTTTTACC AATTGCGAAG GTCGAGCTCC TTCCAATCGG 
ATTAAACTGC TTTGGTAGCG CCTCCAAGTA TCCGAATACA CTGCTCACCC TCAATCAGAT 
GCCGCCTTTG CCAGGTGTGG AGTTACTAGC CCCGAATATT TTAGACAAGT CTCTCTTCAT 
CAATTGGCCA ATGATGCATG AAGGGAAAGT CGTGGCGATT TGCGATGGGA CGAAGGAAGT 
TCGCATTGTG AACGGAAAAT TACAGACGAA TCAGTTGACA CCAAGCGCTG CAGCCCGTTG 
GGCATCGGAG TCAGAAGCAA TGGCTCAAAT GTATCACACG GGGAATGGTG TTCCAGGATC 
CGGTGGAGTA CAGATCGATG AGATCAAAAT TCGCCTCAAG TTACTGCCAT TGCAAGGTAT 
GAAGACGAAC CCGGCAAACG GCTCTTCGAA GAAACTTTTT GGGATAGAAG AAGCTGATGT 
TCCTTTACAA CTAGCGTTAT GGCAAGCACC GGCCCCGGAT CCTCGCTTCG TTGAACGTGG 
CCCAATGACC CTCTCTGAAC GTTTCCCAGA GAGTAGCAGC GTTGTCTTAA CAAAGGGGAA 
ATACCGTGGC TGCAAAGGTC GTGTCGTTGG AGTGGCGGAT AGAAAGAGCG TCGGTGTGAA 
GGTGGAAGTT ATCCCTGCCG AGCTTCCATT TGGGCTTGCG ATTGCCCGGT CGGTTCGGGA 
GTCGCACATC TCATCGTCTG ATGCAGCAAA AATATTGAAG ATGAACCCTG GACTGTTCGG 
TAAGGTTACC GGCCGATTAC AATTTGAACA AGGTCGTTAT GATCTTGGCC TCAACCTGAA 
GTCTAGTGAT GGCATGTGCG TCGTCGGATA TACACGGAAA AAATGGGAAC CGCAAAGCGA 
TCTGGGGAAG AAAGGTGCGA GCCTAAATAA TGCTTGGATG GCCGGAGATT CGCTTCTCGT 
TGTTGGTAGC TCTCGAAACC AAATTGAGGA GGATCGCGAG GATCGAATTC AATGGGAATA 
CACTCCCAAG GCCATCCGTC TGGTAGAAGA TTATCGACGC GAGTTCCCAC AGCTATTCGC 
GAATATTGCG AAGAAGCCGA ATGAGAAAAA GTATGACGCG AACAAAATAT TTGGGTCAAA 
GGGCGAAGCT TGGCTACCGG TTATAAGGGA GTGGCTCGAT AAGCATGAAA CGGCCAAGAT 
GCCGCGTACT CCTGTTTCTA CCCAATCCAT GTCGCACGAA GCGGTCGCGG CGGTACAGAA 
AGCTGCCGAC GTCCGTTCTA TTGCATTGAA AAAAAAGGGA TATCCCAAAG AATCTCTTAT 
AAAAATTCCA GGAAGTGCTT TATACCGAGA AGGTTCGACA GGAGCTACGG ACGTCCTTAG 
TCCCGAAGAC TTGAATGAGA ACGTCGCACC TGATCTTGGT GACCGTGTTG TAAATCTTTG 
TGCTGATGGC ATCCCATTTG GTGCTCGTGG GACTATTGTT GGTATTCATA AAGCATCAAC 
TACCGGAAGC GTCGAAGTCG TCATGGACGA AGAGTTTATG GGAGGTTCAT CTCTTCAGGG 
AGCATGTTCC AACTTCCGAG GTAAGCTCTG TGTCTGGGCC CATCTGCTGA AGATTCTTCC 
TGAGAATGGA GATAGCATGA TTGACAAACT TGTACCAAAA GGGTCGGGGC GAGCAGCTGT 
GGAAAGAATA ATTGCAAACA TTGAGCTTGG GGTTCAGCAA GACGCAAATA GAAAGGCTCA 
TGTCACAAGC AGCTGGGATA GCCAGGTCGA TACGGCTGCG GAACAAATGA AAAGATCGAA 
AATCAACTCT GACTCGATTG TCGTCGAAAG CATTTTGCCC GTAAACACTC GGACACCTCC 
TCGTTCATTG TCGCGGTCTG GAAGCGATTC ACGGTCTGCT AGTGCGCCTC GTCCAGGTAT 
AGCAAAGCCT ACCCTCCAGA CGTATAAAGA AGCTCGTAAG CCGGACGAGA AAG 

 

Protein sequence

MPEIISGTQI PYPGFPSLSV LPIAKVELLP IGLNCFGSAS KYPNTLLTLN QMPPLPGVEL 
LAPNILDKSL FINWPMMHEG KVVAICDGTK EVRIVNGKLQ TNQLTPSAAA RWASESEAMA 
QMYHTGNGVP GSGGVQIDEI KIRLKLLPLQ GMKTNPANGS SKKLFGIEEA DVPLQLALWQ 
APAPDPRFVE RGPMTLSERF PESSSVVLTK GKYRGCKGRV VGVADRKSVG VKVEVIPAEL 
PFGLAIARSV RESHISSSDA AKILKMNPGL FGKVTGRLQF EQGRYDLGLN LKSSDGMCVV 
GYTRKKWEPQ SDLGKKGASL NNAWMAGDSL LVVGSSRNQI EEDREDRIQW EYTPKAIRLV 
EDYRREFPQL FANIAKKPNE KKYDANKIFG SKGEAWLPVI REWLDKHETA KMPRTPVSTQ 
SMSHEAVAAV QKAADVRSIA LKKKGYPKES LIKIPGSALY REGSTGATDV LSPEDLNENV 
APDLGDRVVN LCADGIPFGA RGTIVGIHKA STTGSVEVVM DEEFMGGSSL QGACSNFRGS 
GRAAVERIIA NIELGVQQDA NRKAHVTSSW DSQVDTAAEQ MKRSKINSDS IVVESILPVN 
TRTPPRSLSR SGSDSRSASA PRPGIAKPTL QTYKEARKPD EK