Gene PHATRDRAFT_42896 details

Gene Information

• Locus tag: PHATRDRAFT_42896
• ID: 7196472
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: -
• Start bp: 1452388
• End bp: 1454531
• Gene Length: 2144 bp
• Protein Length: 600 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002177295
• Protein GI: 219111087

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GAGTAGCCGG ATCTTACAAA AACGCACAAA ACATCATAGA CTTCCCAGAT TTCTCCCGTT 
ATTCCACTTT TTGTAACCAA GCTTTATCAC AAGTCTTTTT GCGTATCGGC TCAAGAAACT 
AGCCTTACAA TTTGCCTTCC ACCAGGCAAT TTTTTCTTGT GCTTCCGAAA GGAACGTTAT 
CGATCTTGGT CTCCGCTGGA ACAACAAAGG CTACTTCCGA ACCAGAAATT CAGGCCGTTC 
TCACCTGATC TCGTATCCGA TCAATTTCGC TGACTGTAAT CAATATCACA GTTTGGATCG 
GGTATTTCGC GTCGTTTCTT GCCAACAACG AGTACTTCGC CATGGAGCGG GTTCGAATTA 
ACATCACGCG GTGTTTTGCT CGGGCATTGC TCTTGGGTCT TGCGGGGCAT GATTGTGTAG 
GATCGGTCCG AGCTACTCCG ACCGCTGCTA GTTCGGGGAG GAGGAAATTA GCCAATAGTC 
CGGAACTACT AGGAGCGATT GCCTCACTCT GGGAACAGTC CGAAACAAAT CGAAAAGAAC 
GCATCCTCCG AGCAGACAGA ACCTTGCAGG AATCGCCAGC TTGTGGAGAT ATTCTCGCGA 
CCTTAACCAA GGATGACGTG GTCACCGTGG CTCGTAACGC CTTGGCAGGC CGAGCAGATA 
GTAATACTTT GGCAGCCATT GATTTCCTAT TGGTGCCTTC GATTACCTAT GGTGTTCAGG 
TACGCAAAGT GTGCAGTTCC TGCGCCGATC ACGAGGAAGG ATGTGGCCAA TCGTCAACTT 
CGTATGGATG GAATCAGACC CATTCAGGTT TATTGTTTCT ACCTCTAGAA ACGGTTTCGA 
CTATCGAAAG TGTTGTGCTT AAACAAGGTA TGAGTCTTTG GCACATCTTG TGTCACGGGA 
CGCGTGCCAG TACGTTGGAA GTACCTAGCA ACGAGTGGGT CGATGTCTCG GCAGATGCAA 
GTGGTGCTAC TCCAGATGCC GAAATTGCCG TCAGCTTAAT ATTCACAGCG ACGGCTGGCA 
CAGTGGGAGT AATGCCCGAC TACATGGGCT ATGCTGAAAG CCGTTTGCGA AACGAAACAG 
GCGAACCGGA AGGACTTTTT CGTGCTTATT TAGTACGCCA AGCCTACGCG ACGGCAACAC 
TCCCCCTCGT GTATGAATCG CGTTTGGTAG TGAAGAATTT TTCGGATTGT CAGTCAGCAG 
TCTCAGACAA GGCATTGCTG GTAGGATACA GCGAAGGGGG GTTCGCGGCT GCTTCTTTGG 
CAAACGACAT GTTTGGTTTG GGATTTGACA TAGTCAGCCT CCAGGCAGGT GGCGCACCGT 
TTAGGCTCTC GTCCGAGCAG GTCCTTACGA GCTTCGAACA AGTGCGAAAC GGTTCTTTCC 
AACTTTCGCA ACGCTATTAC ATTTCTCTTC TTGGCAGCGC TTTCTCCTCA ACTTACAGGG 
ATCTTCCCAA CTTTGGAACA TCCCAAAATA TGTTGGATCC CACCGTTCGA GAACAAGTCG 
TTGCCTTAGT TCACAGCGGC GCTGAACGAT CCGAACTTAA CTCTTTAAAT TCACCTGAAG 
ATCCGCTGTC AATTCTATCT CCTGCGTTGA CAGCTGCCAT GGAACAAGCG CTAGATAACG 
GGGAAAGCGA TCCATGCAAG ACCAGTGCCG TCGTCGGCGA ATCTGACCTG CTCTGCCGAA 
GTTTGCAAGA GCAAGATTTA ACGAGCGTAT TGGAGGCCAG CACGTATCCC GTCACGATTT 
GCCACAGTCC AGACGATGAC ATTATTCCAA TTAGCAACCT TCCAGATTTC GCGGCAAACT 
CTCTGCTCGG TTTTAGTGAG TCGTCCGGCG CCCATTCATC CGCTGCTATC CCGTGCTTTT 
TGAATAGCGT CGTATTTTGG GCCAACAATG AAAACTTTGA TGATTCAAGC CTTATCGACA 
CCACTAGCAA TTCTTGCAAC TCGGAGAATC TGAGGACTCC AGCACCAATT TCTCCTACGA 
ATCCGACTGT CTCAACATCA GTGATAGCTA CTACAGAATC TCCGACCATT GCTCCCGTGT 
TTGTATTATC TTTCCCAACG ACGTCGGCTT CCCCTACGAT CGTCGCGACT GAGTTCAGTC 
AATTCAGTCT ACTTTTCGTC CTCATTTTAA TCTATGTTCA ATAG 

 

Protein sequence

MERVRINITR CFARALLLGL AGHDCVGSVR ATPTAASSGR RKLANSPELL GAIASLWEQS 
ETNRKERILR ADRTLQESPA CGDILATLTK DDVVTVARNA LAGRADSNTL AAIDFLLVPS 
ITYGVQVRKV CSSCADHEEG CGQSSTSYGW NQTHSGLLFL PLETVSTIES VVLKQGMSLW 
HILCHGTRAS TLEVPSNEWV DVSADASGAT PDAEIAVSLI FTATAGTVGV MPDYMGYAES 
RLRNETGEPE GLFRAYLVRQ AYATATLPLV YESRLVVKNF SDCQSAVSDK ALLVGYSEGG 
FAAASLANDM FGLGFDIVSL QAGGAPFRLS SEQVLTSFEQ VRNGSFQLSQ RYYISLLGSA 
FSSTYRDLPN FGTSQNMLDP TVREQVVALV HSGAERSELN SLNSPEDPLS ILSPALTAAM 
EQALDNGESD PCKTSAVVGE SDLLCRSLQE QDLTSVLEAS TYPVTICHSP DDDIIPISNL 
PDFAANSLLG FSESSGAHSS AAIPCFLNSV VFWANNENFD DSSLIDTTSN SCNSENLRTP 
APISPTNPTV STSVIATTES PTIAPVFVLS FPTTSASPTI VATEFSQFSL LFVLILIYVQ