Gene PHATRDRAFT_42881 details

Gene Information

• Locus tag: PHATRDRAFT_42881
• ID: 7196525
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 1406802
• End bp: 1409015
• Gene Length: 2214 bp
• Protein Length: 699 aa
• GC content: 54%
• Product: predicted protein
• Protein accession: XP_002176781
• Protein GI: 219110058

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0249417
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTGACAACC GACTGCATAA AACAAGAGCA ACTAACAACA GTTCGGGCTG GAGTGAATGT 
CATGTGGAAG ATTCGAATCG TCGACGATCC TTTGGACGTG GCGGGACGGA ATGATGCCAC 
AGGAGTATTG CTTCTACAAA ACAAGCTTGC GCACGCCACA ATCTCGTTAC TCGATCTTTT 
TCCGGACGTT CCAGAAGTGT CCGGCGAACG GATTGTCCAA ACGGCGTTGG CCGACTTTGT 
GTCGAGGCAG TGGACTCGGG ATTTACATCT CGTACACACG CACCACGAGC AGGGCTGTAC 
CTTTGTGGTC GAGGCTTTGG AGAAGACGAC GCTCCATACC CGCCATCGGA ATCGAAGGAA 
CCGATCCGTA TCCCCGCACT GGACTCCGTA CATGCTGGAA CGCACCGATA TTTGGTGTAC 
TCCGACGGGT GTCTTGCACG TGTGGGTGCG GGTACTGGCC TACAACAACG ACCCCACCGT 
CGTAGCGGGT GATCATCCCA GTCCGGTCCG AAGAGATTGC GCATCCGACA TCTTTCGGCA 
CGGGCAAACG TGTGCCGTAC GCACCATACT GGCGTCAGTC GTACCCGCCG ACACTGCCAC 
ATTCGTAGAC GCTGCCCAAA GGCACGTTGC CACGGCGATG TGGCAGGAAC GGCTGCGCGT 
ACAGTTACGA GCCCACAACG CTGTGGCGTT TGTCGCCGAC GGGTCCATCC TGCCACGCAA 
AAGCGGGGCC AGTCACGCTC CGATGGCCAG TCCTCCCGCT ATTCCCTTTG CCGCACCCGT 
CGATAGTCCA CTCCGACGAG ACGTCTCGGT TGATCTCGGC CCGTGGAAGA CGTATCTATC 
CAAACCAACG CTTGCAGCCA CGCCCGGTAC TTGGCTTGTC GAAGAGACGG ATACAATCCT 
AACAATGACT GGTTTGCTGA TTCCCCGGGG TGTTTCACTC ATTGTGGGTG GCGGTTACCA 
CGGCAAGTCG ACGATTCTCC GATGCGTTGC CGCAGGCGTG TACAACAAAA TTCCCGGTGA 
CGGTCGTGAG TTTTGTGTCA CCGTAGACGA CGCCGTCACG GTGCGAGCCG AAGACGGGCG 
CTACGTGAAC CGATGCAACG TGAGTGCTTT TATTGCCAAT TTACCCGTCC TACCAAATAG 
TGCGTCCGAT ACAGTAAATA TAACCAAGTC CTTTTCGACT GGTGAGGCAT CGGGTTCCAC 
CTCGCAGGCG GCCAACGTGG TGGAAGCGAT GGAAATGGGA GCTTCGGCTT TTTTGGTGGA 
TGAGGATGTG AGCGCGGCCA ATTTTATGGC ACGAGACGGA AGGATGCGGG CACTGGTCAT 
GGACGAGTCC ATCACGCCAC TGTTGTACCG CGTAAATGGG CTGTACCAGA AACACGGCAT 
CTCTTCCGTT GTGGTGGTGG GTGGTGTTGG TGATTGGCTG GACGTGCCCG ACGCCGTCAT 
TCTCATGGAC AAGTACGTGT GTCACGATGC GACCCAAAAA GCTCGATCGG TCAGTCGGCA 
GTTTTCGCAT GGACACGTGC AGTATGGTGG ACGAGGGGTG GTTCATCGAC TAAATTGGGA 
AAGTACAGGA ACCCCCAATC CACGCAGGCC CACCGACGCA TGGAGCCAAA AATTCGACCG 
CCAATCCACC GTTATTTCCT TATTGGACGG TGTTCAATCA CTTGTTTTGC ATCATGCTGA 
GGAAGATCAG GCTATTACAA ATGACGAGGA GGAAGAAGAA GAAGCTATGA TTGATTTGTC 
ACGTTGTGAG CAACTGCTAG GGAAAAAACC TCAGCTGTAC GGATGTGGTC TTTGCGTAGT 
TTGGTTGCTA GAAGCATCCC GCCAATACCC AAATCTAGGT TTGTCCGATC TTTTGCACAA 
GATGGATTCA GCCATTGACA CGGAGGGACT ATTCAATGTA GTCTCGGCGG TCGGTGAGAC 
CAATACTTCG TTACAGTCCG AATCGCTTCC GGCGAACGTG GGACTGCTGA TCGAAACGTT 
GGGGTGCGCG TTTCGGCCGC GTCGGTTCGA AGTAGGCCAA GCATTAACTC GTCTCCGTGG 
TATTCAACTG GAAGAGCTAC CGGTAGAAGA AGATCTAGTG GAAAAGGCGG CAAGAGAGGA 
AGAAGCGAGG AAAAGGCAAA GGCTGCGGGA GATATGGGAA GCCCGACGCC AAAAAGGATA 
AACCCAATGC GCCACATATT TCTAAAGGAA AAGAAGTACT GAAAATGTGT ATTC 

 

Protein sequence

MWKIRIVDDP LDVAGRNDAT GVLLLQNKLA HATISLLDLF PDVPEVSGER IVQTALADFV 
SRQWTRDLHL VHTHHEQGCT FVVEALEKTT LHTRHRNRRN RSVSPHWTPY MLERTDIWCT 
PTGVLHVWVR VLAYNNDPTV VAGDHPSPVR RDCASDIFRH GQTCAVRTIL ASVVPADTAT 
FVDAAQRHVA TAMWQERLRV QLRAHNAVAF VADGSILPRK SGASHAPMAS PPAIPFAAPV 
DSPLRRDVSV DLGPWKTYLS KPTLAATPGT WLVEETDTIL TMTGLLIPRG VSLIVGGGYH 
GKSTILRCVA AGVYNKIPGD GREFCVTVDD AVTVRAEDGR YVNRCNVSAF IANLPVLPNS 
ASDTVNITKS FSTGEASGST SQAANVVEAM EMGASAFLVD EDVSAANFMA RDGRMRALVM 
DESITPLLYR VNGLYQKHGI SSVVVVGGVG DWLDVPDAVI LMDKYVCHDA TQKARSVSRQ 
FSHGHVQYGG RGVVHRLNWE STGTPNPRRP TDAWSQKFDR QSTVISLLDG VQSLVLHHAE 
EDQAITNDEE EEEEAMIDLS RCEQLLGKKP QLYGCGLCVV WLLEASRQYP NLGLSDLLHK 
MDSAIDTEGL FNVVSAVGET NTSLQSESLP ANVGLLIETL GCAFRPRRFE VGQALTRLRG 
IQLEELPVEE DLVEKAAREE EARKRQRLRE IWEARRQKG