Gene PHATRDRAFT_42799 details

Gene Information

• Locus tag: PHATRDRAFT_42799
• ID: 7196164
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 1161122
• End bp: 1165356
• Gene Length: 4235 bp
• Protein Length: 1343 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002176733
• Protein GI: 219109961

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.528448
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCCCG TTGGTGACGC CCTGTTGGGA AATGATGTCG ACTTTCACCC TCCCTTTCCG 
TCCGACAAAG CCGACTACTT GCAAGCTACA GTATTGCAGG GTCTAAGCTC TGCGAGTGCT 
AGGGTTATTC TGTATTCTGT AGAGAGTCCA TCAGCAACGG TCACAGTCAG TCCTGCTGTG 
ATGAACCCGC AAAAGTTGCC AGCAGGTTCG AGATACTCAA CGTTCAAACT TGCGGTGTAC 
GATCCCTCGA TCCGAGAGAC GTTGTAATAC TGTTGTAATT TGATCCAGCA ATTATAGCAA 
TCCAGCAAGA ATAGCGTCGT TGCTAAGTAA GAGCGCGGTC TCTACTTTCC GCAACAATTC 
GAATATGAGC CACTCAGCAT TATCAGATTA TGAGGACCAT GACGAAGAGG AAGACGAGTG 
CCGCGTGTGC CGCGGTCCAG AGGAAGAAGG GTAAGCATCA CTTTGATACA GCTGTCGATC 
CTCGTGCCAA GCCATCCTGG ACCTTAAGCC GCAGACGAGC ATATTTTGGT CTTCCAATCG 
TGCCTTTTCG GTTTTGGCCG AACGAGTTTG TATGAAGCAC TCTCTCCAAC TTATCCCTGA 
TCTCACTTTG TCTGTTTTTG TGCGTCAGAC GACCCTTATT TAAACCTTGC AAATGCTCCG 
GGAGTATCGG TCTGACGCAT CAGGATTGCT TGCAATCCTG GCTTGAGGTG CAGCGAGGCG 
ACGGCCGGTG CGAGCTATGT CACACTGAAT TTCGCTTTGC TCCTCAATAC GACAATGATG 
CCCCCGAGCG ATTGCCCGCT TCTCAAGTTG TCTTGAGCTT GATGCGACAG TTTTTCTCTC 
GCTGGCTTCC AGTCTTGATA CGTTGCGTAT TTGCCGCCAG TCTCTGGCTA CTCGTAGCCC 
CCCTTCTTAC GGCGTATGTC TACCACGCAT GGATGCATCA ACCGTCGGTG GTCTGGGACC 
GCTGCTCCGA CTGGAGTCTC ATTCCTGGTG ATATGGTATC GGGGGCCGTC CTTGTGGGGG 
TCATCATTGT CAGCTTTTTA TCAATAATGA GTTTTATTGA CTTTTTGCGA GTGGAATGGC 
ACCCTGACGG TCGGCCCAGG CCGCGCTGGG GGGAAGAAGG ACCGGAACCA GCCGTGGGGG 
AAGCCCCCGC TCCCGATGAA AACGCCATTG ACAATGCCGT TTGGGATGCC TTCCAGCGAC 
AGGTTGTGGA GCGACATCGA CGGCAACGAG GAAGAGCGGT ACCTCAACGA GTCGAACATG 
AACTTCTGCA AGCACATGCG CCAGGACAGC CACGAACAGA GGAACGGTTC TCGAATGAAA 
ACGTGGAACT TGACGCATCT GGAAGCGACT CGGAATCGAG TTGGCAAGAC GACGATGACC 
GTGACGATGA TGACGATACG GTTTCGGATG ACGAGTGGAT CGAAAACGTT GAAGAAGACG 
ACGATAGCGT AAATGATGAC AACGATCGAG ATGAGCCACA GTTGCATCCA CCTGCTGTCC 
CCATTGTCGA CGATCGAGAC GACGGTGACG AAAATCCTCA GGCATTTGGT CGTAACAATT 
TTGACATGGA CCCGGATGAC GGGATGGATA TGGATATCAA CATCGCACTC GATGAGTTGT 
TGGGTGCACG GGGACCAATA ACTTCGGTGG TTCGCAATCT TTTGTGGCTG CTGGCCTTTA 
ACACTGTGTA CTTGGGCTTT TTTGGATTTA CACCAAAAGT GCTGGGGACC ATAACGTCAA 
CGATCTTTAG AAATACTACA GTATGGTCAC CCATGGTTTT CACTATTGTC ACCAACGCTA 
CGGTGCCCGA TGACACTCAA ATCGCAAATG AATCTCTGTC GATTTGGACA GCGTACAGGG 
CCATTGAGTC TGAGAGCGCA AGTGCCAATA CAACATTTCG ATTGCACGAT CTTTTTTTGG 
TACTCTTGGG CTATGCTTCG TGCGCTGGTA TGGTTGTTCT CATTCGCTTT CTGTGGTTAG 
CGTCTCAAAA GATTCGAGCT CTTCGGAGCG GGCGTGCTGA CAACCCAGTA CCCTTGCGTG 
AACTCCAAGA AGGGTTTGAG GAGATGAATC GAATCATGCG CATGGGTCCT GAACAAATGA 
ACATGGTAGA TGACAATGTT GCCATTCACG TTTTCCTTAC CACGACTCTC GATGCGACTT 
TGGCAATTAC GAAGGTCGGC GTACTTTTGT TCATGAAGAT GTTTTTGCTA CCTATTTGGT 
TGGGTCTATG CTTGGATGTT TCTTCGCTCC CAATCTTAGG AAGCTCGTTC GAGGAAAGAA 
TCGCTTACGC TGGGAAAGAC TTATTCTCTT TTCTCTTGCT TCATTGGGTC GTGGGCATAA 
CCTTCATGCT TCTAGTGACG GTATCTGTCC TTCAGCTTAG GGAAGTAGTA CATCCTGAAC 
TACTAGCGCA GACGATTCGG CCACAAGAGC CCCAACCAGA TCTTCTTGGT AACTTAATGA 
ATGAAAGCAT CATTACGCAT ATGAAACGAA TGGTGCTTTC CCTTGTCATC TACGTGGTGC 
TACTTGCTAT GTACATATAT CTCCCAATTC AGGCAATCAT GGCAAGTGGC GTTAGCGCAG 
ACCTATCAAT GGCACAACTC AAGTTCTGGT ACCCTATAAT GCCAGAGCTT CAGGTTCCTC 
TGGAGCTACT TACATTCCAT CTTTGCATGC TGGCACTTCT CGAAAAGCAC AAGAACTCAA 
TCGGTGAAAT TCAGCATTAC TGGCTCAAAT TTATATCGAG GCTTGTGGGG TTGACAGACT 
CCCTGATTCC CATGCGCGTA GATTGCTTTG AGTATGTTGG AGTGCTTCCA ATATTCGAGC 
ATGAAGCTGT CTCGCCTTTT TGGTCCAAGC TGGCAAAAAA CGAGAATGAG AGAGAGAAAC 
TTCTGGATGA AAGCGTAGCA ACTTTTCTGA AGAGCGACAT TCCACGAGTC AATATAGGTC 
AGTCCAAAGC TAATGGACAA CGTGTTCTGG CATCTAAAGA CTATGTTCGG CTTCCGGATG 
TTCTTCCTGG TAGATTGCTG CGCAGTCGTT CCGTTCTCAT GCCGACAACG ATTGGAAAGT 
ATCGTCTTCA ACGAATTCTC TCGCTCGACG GTACTCCCTT GATTGAAATC TGGAAAGAAG 
AACGAGGCAC GCCCATTGCA CGTCCACCAG AAGGGTGGGA TGATCTTGGC GCAGGAGGAG 
CTGATGTTCA AGGACGCTGG GCCTGGGGAC GGGAGAAGAA ATCCGTCGTT GAAGAAGCTA 
TTGCGCATCG AGTGGATTTT TTCGGTCGAC ATAAAGCATC AGTATCCTAT TGGGCCGTAT 
GGGTTAAACT CATTTTCATG TTCTTCTCAG CGTGGCTGTC GACCACTTGT TTCATTTGCA 
TTTCGCTTAT ATGCCCGTTG GCTTTTGGCC GAACTCTGTA TCATATACTC CAAGTACCTC 
AAGCCTACGT TCATGACCCT TTGGCTTTCG TTGTCGGCTG TCTTATCTTT TTCCCTGTGG 
CACGATGTAT TGGACGATGG AGTCTCTCTG GAGAGAACTC TCTGATGCAG AGGCTCTTCT 
CATGGCTGCG GTCTTATAGA CGCCCGCCCT CTGCCAAAGC AAGACTTTTG CTTGTCACAG 
CTATTACATG TTTCGGTCTT GCACCTGTCC TACTTGGCTT TATCTATCAT GCTCTCCTTG 
TGAAATTGCC TCCTTTCTTT GCTGGAACAC AGGAGTGGAT CGCACTCTCG CTTTTCTCAT 
CGTATTGGGC AACCGGATTT GTTTTGTTAT TTGCGTGGGC GCGGCTCTGT ATTGCTGAAG 
CATTTACCAA AAAGTTTTGG AAAGGTCTAA TGGGAGCTGC TGGCGATGTC GACGATAACG 
AAGGCAATGT CCAGAATAGT TTACGGTGGG CTTGGCAAGG AAAGGAAGGG CGCGTATCTC 
GGTTTACCAA GTGTTGGAGA AAGGTTGTCT TAACCTGGGA ATTTGACCAG GTGGATCTGA 
ATACGCTAGT CGACGACGTT GCCACTCCTG TTATCACTGC TCTAGCAAGA GTTGTAGTTC 
CATACTGCAT TTTTATGATG CTAATTGTCA GAACTTTTGG ACTAGACCAG GTCACTGTTG 
CTACCTTTGG CCGAATAGCA TTGGGGCTTC TGTGCGCCGA GGGAGTTTCA CGAACTTGGA 
GGATACAGTT TTCGAATTGG CTTGAAGCCG CCCACCAAAT GGCACGAGAC GACCGCTACT 
TGATTGGCGA GATGCTGATG AATTACGATG GATGA 

 

Protein sequence

MSPVGDALLG NDVDFHPPFP SDKADYLQAT VLQGLSSASA RVILYSVESP SATVTVSPAV 
MNPQKLPAGS RYSTFKLAVY DPSIRETFNY SNPARIASLL SKSAVSTFRN NSNMSHSALS 
DYEDHDEEED ECRVCRGPEE EGRPLFKPCK CSGSIGLTHQ DCLQSWLEVQ RGDGRCELCH 
TEFRFAPQYD NDAPERLPAS QVVLSLMRQF FSRWLPVLIR CVFAASLWLL VAPLLTAYVY 
HAWMHQPSVV WDRCSDWSLI PGDMVSGAVL VGVIIVSFLS IMSFIDFLRV EWHPDGRPRP 
RWGEEGPEPA VGEAPAPDEN AIDNAVWDAF QRQVVERHRR QRGRAVPQRV EHELLQAHAP 
GQPRTEERFS NENVELDASG SDSESSWQDD DDRDDDDDTV SDDEWIENVE EDDDSVNDDN 
DRDEPQLHPP AVPIVDDRDD GDENPQAFGR NNFDMDPDDG MDMDINIALD ELLGARGPIT 
SVVRNLLWLL AFNTVYLGFF GFTPKVLGTI TSTIFRNTTV WSPMVFTIVT NATVPDDTQI 
ANESLSIWTA YRAIESESAS ANTTFRLHDL FLVLLGYASC AGMVVLIRFL WLASQKIRAL 
RSGRADNPVP LRELQEGFEE MNRIMRMGPE QMNMVDDNVA IHVFLTTTLD ATLAITKVGV 
LLFMKMFLLP IWLGLCLDVS SLPILGSSFE ERIAYAGKDL FSFLLLHWVV GITFMLLVTV 
SVLQLREVVH PELLAQTIRP QEPQPDLLGN LMNESIITHM KRMVLSLVIY VVLLAMYIYL 
PIQAIMASGV SADLSMAQLK FWYPIMPELQ VPLELLTFHL CMLALLEKHK NSIGEIQHYW 
LKFISRLVGL TDSLIPMRVD CFEYVGVLPI FEHEAVSPFW SKLAKNENER EKLLDESVAT 
FLKSDIPRVN IGQSKANGQR VLASKDYVRL PDVLPGRLLR SRSVLMPTTI GKYRLQRILS 
LDGTPLIEIW KEERGTPIAR PPEGWDDLGA GGADVQGRWA WGREKKSVVE EAIAHRVDFF 
GRHKASVSYW AVWVKLIFMF FSAWLSTTCF ICISLICPLA FGRTLYHILQ VPQAYVHDPL 
AFVVGCLIFF PVARCIGRWS LSGENSLMQR LFSWLRSYRR PPSAKARLLL VTAITCFGLA 
PVLLGFIYHA LLVKLPPFFA GTQEWIALSL FSSYWATGFV LLFAWARLCI AEAFTKKFWK 
GLMGAAGDVD DNEGNVQNSL RWAWQGKEGR VSRFTKCWRK VVLTWEFDQV DLNTLVDDVA 
TPVITALARV VVPYCIFMML IVRTFGLDQV TVATFGRIAL GLLCAEGVSR TWRIQFSNWL 
EAAHQMARDD RYLIGEMLMN YDG