Gene PHATRDRAFT_42643 details

Gene Information

• Locus tag: PHATRDRAFT_42643
• ID: 7195998
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 684151
• End bp: 687876
• Gene Length: 3726 bp
• Protein Length: 1238 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002176629
• Protein GI: 219109751

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.107643
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACGAG CAAAGAAGAA TCCCGCCAGT AGCGTGAAAG TCCGTTTCGA CGGACTCGAC 
GTGACGGCCA TGGTGTCGCA CGTACAACGC CGCTTGCTCG GACGCAAAAT TATCAACGTC 
TACGATGGCG ACAACGGCGA AACGTACGTC TTCAAGCTGG ATAGTAGTGG TGGGACTACT 
ATCAGCAACA ACAACAACAA CACTAGCAAC TCTAAAGAGT TCTTGTTACT GGAGTCGGGA 
ATTCGCTTTC ACCCGCTGGA GCATTTCGAG TCAAACTTGC CCATGCCGAC ACCGTTCTGT 
GCCAAGCTGC GCAAGCATTT GCGGGGACTC CGACTGGAGC AAATATCGCA AATTGGGACC 
GATCGAGTGA TACTCTTGCA ATTTGGTTCC GGAGCTTCCC GGCACGCTTT GATACTGGAA 
CTGTACGCCA AAGGAAACAT TATCTTGACG GAGGGGATTC ATTACACCAT ACTGGCACTT 
TTACGATCGC ACGTCTACGA AAAGGATCAG GTCGCCGTCC AAGTTGGACA GGTCTATCCT 
GTTACGTATG CCACATCGGT ACAAAAAGAC AACCAAACCG TAGCGAATGC TGTTGCGGCT 
ACCGATACTC AACCCGAAAA CGATCCGTCA CCAACTTCTA GAATCATGGA CACTGCATGC 
GCTGCCAAAA ACAAAAATGG TATTCTAAAT ATGTCGATTG AGGAGATTCA AGCATCCTTG 
GCGCTGCTAC TCGAGCCGGC ACCGGTATCA GCAACGACCA AAAAAGGGAA AAAAGGAAGC 
CCGCTCAACT TGAAAACGCT CTTATTGCAA CCCCAATGGG GTGTCTCTCA GTACGGACCC 
GCACTACTGG AGCACTGTAT TTTACAGGCA AATCTGCTAC CGCATGCATC GATCAAGGAG 
ACCGTGCTGC AGGCGGCTGA TTGGGAACGA CTGCAAACAT CGCTAAGCGA ACAAGGTCCT 
GCCATCATGT ATAATCTACA CTCGGCAGCG ATCGACACGC CCGGCTACAT TCTTTATCAA 
CCTCGCGTGG AGGAAGATAT CGTTAACGGC AAGCCGCATT CTGAAAATCT GTCGTCGGCA 
GTTGCAGTCG TGGCCAAAGA ATTAGCACAC GCTGATAAAG TACTGCTCGA ATTCCAACCC 
CACTTGCTTG CCCAACACCA GAATTGTCCC CGGTTGGAGT ACAAACACTT CGGCGCCGCC 
GTGGCTGACT TTTTCGCGCA TATGGTTGCC CAGAAACGCC TTCTCAAGGT CCAAGCCTCG 
GAAATGGCCG TCCAAGAAAA ACTGCGGAAA GTACAACAAG ATCAAGCCGA TCGCGTGATG 
GCTTTGGAAC GCGACCAGCA AACGCTACAA GCTTATGCCC AGGTAGTCAA GAACAACGCG 
GAAAACGTTG ACAAGGCCTT GCTAGTGATA AACTCAGCTT TGGATAGTGG TATGGATTGG 
GATCAACTGA TTGAACTTGT GAGTGTTGAA CAGGCAAATA GAAATCCGAT TGCTAATTTG 
ATTGTCCGCT TGGAATTGGA AAATGAAATC ATGATACTAC GACTGCCTCG AGACCCGTTC 
GACGAATTGT CTGACGTGTT GAATGTGAAT GTGTCGTTGA AAGATTCGGC GCATGCCAAC 
GCCAGTGCGC TGTTTGCAAA GTATAGGGCA TCCAAGGAGA AGACACAAAA AACTCTTGAA 
TCGTCAAGTA AGGCTTTACA GGCGGCCGAA GAAAGCGCCC AACGGCAATT GATCGAAGCC 
CAACGACGCA CGAAACAAAC TGTCGCTGCC GTCAAGCGCA AGCCAGCTTG GTACGAAAAG 
TTTCACTGGT TTGTCACTAG TGACAACTAT CTGGTGCTAG GCGGTAAGGA CGCCCACCAG 
AATGAGTTGT TGGTCAAACG ATACTTGCGG GCCGGGGACG CTTACTTGCA TGCTGAAGTG 
CACGGAGCTG CCTCGTGTAT TCTTCGTGCT AAACGTCGAC GACTCCCGAA CGGAGCCACC 
CAGAGTATAC CCTTGTCTGA CCAGGCCCTG CGGGAAGCGG GCAACTTTAC AATTTGCCGG 
TCTTCAGCAT GGGCGAGCCG CATGGTCACG TCCGCTTGGT GGGTGGAATC GCACCAAGTA 
TCCAAAACTG CACCGAGTGG AGAATTCTTA ACCGTAGGGT CATTTATGGT ACGAGGTAAA 
AAGAATTTCT TGCCTCCGAG TCCACTAGAA ATGGGCTTGG CCGTGCTGTT TCGGTTAGGC 
GACGACGATA GTATTGCCAG GCACAAAACC GAACGTAGAG ACTTTGCCCT GATTGAGTTA 
GAGAATTCTA GCGTGGATGT GCTCGACGCC GTATCGTCGT TTCAGATGGA GCCGAAGACA 
AATATTGAAG GTCAAGAGGC TACGACACAC AGAGACACAA CAGAGCACGA AGGATCCGAT 
TTAGTATCGG ATGAGGTCTG GATGACGCTT CCGAAAGTCA TCGTCTCAAA CAGCACGTCT 
AGCGCTGAAA ATCTGATCAA CGATCCTACG CGCGACGACG GTAGTTGTGG AAGCGATGGC 
AACGAAGAAG CCAAGAAAGG GTCGACCACA AACGAAGGAA ATGGACGCCG TACAAAAAAG 
GGCCTTTCGG TCAAAGAAAG GAAGCAAATG AAGAAATACG GTTCGCTCGG CGAAGCTAGG 
AAGTTGCACT CAACAGTTGC AGTTGACAAG TCATCCACAG AGGATACCCA CGGTCAGCAG 
CCTGTTTTGC CCTCCTTGGA CGGCCTCATT GACGCGAGCA AACTGAAGAG AGGCAAGCGA 
GCGAAAGCGA AACGTGCCAT GCTAAAGTAT ATGGATCAGG ACGACGAAGA TCGAGAGTTG 
GCGATGCTGG CACTGCAAGG AGGTGAAGGA AAAAATCGAA AAAAGGGCAA GAATAAACGC 
AGCCAAGGAC CTGTGTCAGC AGCGCAAAGT CAAGTCGCAG GAGAAACTGC TGCATTATTA 
GTAAGAGATA CGTCCGAGAC CATTGAACAG CTACCCGGTC AAGTCGTATC TATTTTGCAA 
GAATGCCTAA CTGCAAACAA TGGACTAGGC AAGCATAACG AAGCGATTCG CTGGGATAAA 
CTTGACTCCG ACACTGTGGA GCAGCTTGTT GCGCTAGAGT CCTTGGACGC GCAAGTAGCT 
GCCGCAACAC GTCTTTTGAA TTTAAAAACG AGTACTCGAG TGGACAACTT CTCAGCGAGT 
TTAGGTGGTA TTATTCGTAC TATTCGAAAA TACGGATACA GTTGTCTCGA TGATGAAAAG 
ACCGAAGTAC TAGAAAAGCC AAAAAGGAAG ACGAAAGCGC AGAAAGATGT TGAAAGTACA 
CAGTGGAAGC AAACAATGGA AGAGGAGGGA GTTGTTGGTA GCGACCTGGA TGAAGATGCG 
GTCGATGATA CGATCGAGCT GAGCAAGTTA TCTGGAATGC CTCAAGCGGA AGATCTTGTT 
CTCTATGCAG TACCAGTCTG CGCACCTTAC CAAACTCTTT CAAAGTACAC ATATCGTGTC 
AAACTCACAC CTGGTAGCAC GAAGAGAGGA AAGGCTGTCA AGCAGTGTGT GGACATGTTT 
TTAAAGAACA TGGTTTTGAA AGAGCCTTCC GCCTCGGAGC ATTGTACAGA ACTCATCAAG 
AAGCTCGGAG ACAACGATTG GGTACAAGTT ATTTGTGCAG ATGTAAAAAT ATCTGCACCG 
GGGGCTAGCA AGACAGCGAA GAAGCACAGA GCAATCACTA AGAAGAAAAA CAAATAGTGA 
ATACTT 

 

Protein sequence

MQRAKKNPAS SVKVRFDGLD VTAMVSHVQR RLLGRKIINV YDGDNGETYV FKLDSSGGTT 
ISNNNNNTSN SKEFLLLESG IRFHPLEHFE SNLPMPTPFC AKLRKHLRGL RLEQISQIGT 
DRVILLQFGS GASRHALILE LYAKGNIILT EGIHYTILAL LRSHVYEKDQ VAVQVGQVYP 
VTYATSVQKD NQTVANAVAA TDTQPENDPS PTSRIMDTAC AAKNKNGILN MSIEEIQASL 
ALLLEPAPVS ATTKKGKKGS PLNLKTLLLQ PQWGVSQYGP ALLEHCILQA NLLPHASIKE 
TVLQAADWER LQTSLSEQGP AIMYNLHSAA IDTPGYILYQ PRVEEDIVNG KPHSENLSSA 
VAVVAKELAH ADKVLLEFQP HLLAQHQNCP RLEYKHFGAA VADFFAHMVA QKRLLKVQAS 
EMAVQEKLRK VQQDQADRVM ALERDQQTLQ AYAQVVKNNA ENVDKALLVI NSALDSGMDW 
DQLIELVSVE QANRNPIANL IVRLELENEI MILRLPRDPF DELSDVLNVN VSLKDSAHAN 
ASALFAKYRA SKEKTQKTLE SSSKALQAAE ESAQRQLIEA QRRTKQTVAA VKRKPAWYEK 
FHWFVTSDNY LVLGGKDAHQ NELLVKRYLR AGDAYLHAEV HGAASCILRA KRRRLPNGAT 
QSIPLSDQAL REAGNFTICR SSAWASRMVT SAWWVESHQV SKTAPSGEFL TVGSFMVRGK 
KNFLPPSPLE MGLAVLFRLG DDDSIARHKT ERRDFALIEL ENSSVDVLDA VSSFQMEPKT 
NIEGQEATTH RDTTEHEGSD LVSDEVWMTL PKVIVSNSTS SAENLINDPT RDDGSCGSDG 
NEEAKKGSTT NEGNGRRTKK GLSVKERKQM KKYGSLGEAR KLHSTVAVDK SSTEDTHGQQ 
PVLPSLDGLI DASKLKRGKR AKAKRAMLKY MDQDDEDREL AMLALQGGEG KNRKKGKNKR 
SQGPVSAAQS QVAGETAALL VRDTSETIEQ LPGQVVSILQ ECLTANNGLG KHNEAIRWDK 
LDSDTVEQLV ALESLDAQVA AATRLLNLKT STRVDNFSAS LGGIIRTIRK YGYSCLDDEK 
TEVLEKPKRK TKAQKDVEST QWKQTMEEEG VVGSDLDEDA VDDTIELSKL SGMPQAEDLV 
LYAVPVCAPY QTLSKYTYRV KLTPGSTKRG KAVKQCVDMF LKNMVLKEPS ASEHCTELIK 
KLGDNDWVQV ICADVKISAP GASKTAKKHR AITKKKNK