| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_42565 |
|---|
| Symbol | |
|---|
| ID | 7196265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 430377 |
|---|
| End bp | 431986 |
|---|
| Gene Length | 1610 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177089 |
|---|
| Protein GI | 219110675 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.19029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CATCGATCCG CCGCATAGCA TTCTACTTTT ATAGTTTGCT GTAAAGCAGA AACAATTTTT
TCTTCTCCAC AAGGCCGAAA TCGTGGTGCT CGTTGCTACG ACCTGGAATT CCTGAAGAGC
CTTTTTGTCA TTACAGTCTT CTCTCCCGCA GCTCCGCCCC CTTGGGAAAA AGCAGCGTGA
TCCTATACTT TGCCAACAAA GTCAACCCAT GTACTTAAGG CCATCGCAAT GGCTCATTGC
TGCACTGTGT CTCGTCAGAG TTCATTCCTT TGGTGGCCTC GAAGCGATAC CATTCGCGGC
AGTGGATCAC CACGCCCTCA CTCATTCATT GACAATAGCT TCTGGCTCTT CCTTTGAAGC
TTTCACGTCC TCTACGAACA CTCTTGCTTC CAGTCTACTC ACTGCGTACA CCGACACACT
CGCAACGTAC CCGTTGCCGA CCAAGGTTGC AACTGGCGCT TCCTTGGCAG TTGTGGGGGA
CGCAATTGCG CAATCTCGAG AACCCGATGC GTACGACAAA CGCCGGGCCG CATCCTTCAT
GATGTTTGAC ATGGCATATC GAGCAACCCA ACACGCGCTT TTTCCCATAA TTGTACTGCA
ATGCCACGGG CAGTTTTTGA TGGCGCCCAT TGTCGCATTA TCGCCGTGGT GGGCGTCGTT
CGCCTCTTTG GACGCGCTTG CCGCTATGGA ACGGACACTG GCGTCCCAAC TGGGCATTGT
CCCCTTTTTG TATTATCCCG TCTTTTTCGC CTTGACGGGA GCTGTCCAGG GACTTTCCCT
TGATGGTGCC ATCAATCGCG CGAAGGAAAA CTTCATCCCG CTCATGAAAC GCAATCTACT
GTTTTGGATT CCGGTACAAT TCGTGCAATT TGGTTTTGTG GAAGAGAATT TGCAAATTCC
TTTTTTGTCC GTATGCGGTT TGTGCTGGAC CTTTGTTTTG TCCGTAATGG CGGGCTCCAC
CAAGAATTAC AACCAAGAGG AGAGCACTGC TGATTCTACT GTTACGACTA GAAATCCCGT
GACGGTGTCG ACCAACGGGG CTACTAGTCA GTCATTGCCG ACGGAGGATC GCTATTGTGT
CACCGGGTTT GAGGAAGGAT GTCACCTTCC AGATGACTTG TTTCCGCACA CGACTTTAAA
AGATGTGTCG CACGAGCTAG AGCACATGGC TGATGACTTC GCTCACGAAC TCGTGGAGAT
TGCCGACGAA GTTGCCCACG AAATTCATGA CCTGGCCGAA CTTACCGAAG AGGGCTGGCA
CGAAATTACC GAGTTCGCCC ATTTGGAAAG GAAGTCACAG GCGTCCGCGA AGGTGGACAA
AAGTGAAATG ACGGACGGTG GTATTTCGAA CAGGGAAAGC TCAATGATCG ATATGGAGAC
TGGTTCCGCG AGCACGAAAG AAACTTCTGT GGCGAAAGCA GTGCAAGAAG ACAAGGAATT
AACGCTGAAT CAGTACAAGT AGCATCCGAT AGACAACTTG CTGTGAATCT ATACACGCCG
CCTTCATTCG CTTCATTGAC GTGGCTACAG AGTCAAAAAA ACAAATTACT CTGGACCATA
TCATATGTTT CACGAGTCTA AGTAAGTTTA ACTTGCTTGC TTTATACTAT
|
|---|
| Protein sequence | MYLRPSQWLI AALCLVRVHS FGGLEAIPFA AVDHHALTHS LTIASGSSFE AFTSSTNTLA
SSLLTAYTDT LATYPLPTKV ATGASLAVVG DAIAQSREPD AYDKRRAASF MMFDMAYRAT
QHALFPIIVL QCHGQFLMAP IVALSPWWAS FASLDALAAM ERTLASQLGI VPFLYYPVFF
ALTGAVQGLS LDGAINRAKE NFIPLMKRNL LFWIPVQFVQ FGFVEENLQI PFLSVCGLCW
TFVLSVMAGS TKNYNQEEST ADSTVTTRNP VTVSTNGATS QSLPTEDRYC VTGFEEGCHL
PDDLFPHTTL KDVSHELEHM ADDFAHELVE IADEVAHEIH DLAELTEEGW HEITEFAHLE
RKSQASAKVD KSEMTDGGIS NRESSMIDME TGSASTKETS VAKAVQEDKE LTLNQYK
|
|---|
| |