Gene PHATRDRAFT_42557 details

Gene Information

• Locus tag: PHATRDRAFT_42557
• ID: 7196096
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 413686
• End bp: 415771
• Gene Length: 2086 bp
• Protein Length: 692 aa
• GC content: 50%
• Product: predicted protein
• Protein accession: XP_002176580
• Protein GI: 219109652

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGTGG ATTCTTCCGT CGCTTCTTTC GACGACACGA CCCGAACCGA TGGTTCCTCT 
TTTGAAGCCG ACGATGTCTT GGCTTTTCTG GAAAACAATT TACAAAACGT TCGTGACCTG 
TGTGTCTCGA AACTTTGGAA CGACGACCGC CTCGCTGATT TAGACGATTT CTTACGGAGC 
CATCACGCTG CTCTGCACCT ACAAGCCTTG CGCTTACCCA ACAACGGACT TACATCCCGT 
TCCTCGGTTA ACCTTGCCAA CATTCTTTCC ACAACGCAAA CCCTGCGCGA ACTCGATTTG 
TCCGACAATC AAGTGGAGTC CCAGGGACTG CTGGCGCTGT TGCCGGCGTT GACGCACGAA 
ACCTGCGCAC TCCGGCGCCT CGACTTGTAC AATAATAAAC TCGGCGCCAC CGGGGCCACA 
CAAATTGCCG CCATTCTACG GGACAACCGA TCTCTTCGCG AACTCCGCAT TGGCAAAAAC 
AATCTCGGCC GGAAAAAGTC CCTCAAAGTA ATTTCCACGG CGCTGCAACG GAACGCAACC 
CTGCGAACGC TTGATCTGTC GCACAACCAA ATTGATGACG GCGGCGCCAT TTTATTGGCG 
CCCGTTTTGG ATCCGGAAGT CTCACAGTCA CGTTTGCGCC GCTTGGACTT GACCTACAAC 
AAAATTTGGC CAGAGGGTGT CCGAAACCTT ACCGGAGCCC TGCTGGAAGG CAACCGGACC 
TTGCGATGTT TGAACTTGAG TATGAATCAC GTTGGACCCG AGGGGGCGGA GTCATTGGCG 
GTCCTATTGA AGTTCTCCTT CACGTTGCAG GAACTTTTAC TGTCGCGCAA CGCTTTGGGA 
GACCATGGCG TCAAATTATT GTGCCAAGGG CTAGACGAGA GTAAATTGTT GAGTGGGACA 
GGCTTGCAAA GATTGGATTT GGACTGGAAC GAGATACACG ACGACGGAGC CAAGGAATTG 
GCGACAATGC TGCTAGACAA CGCTATACTG GAGTCCCTCA ACTTGGCGAG TAACGCTATC 
GGTAGCGATG GAGCCAAGGC TCTAGCGAAT GCTCTGCACT CCAATCAAGC TTTGACATTT 
TTGAATCTAA TGGGAAACCA AATTCGAGAT CCTGGTGCGT TCTCTCTAGC CGAGAACCTT 
TGCCGCCCGT CGTGTCGAGT GGAAACGTTG CTGTGGGAAA AGAACAATTG TTTGACGCCT 
TTGGGAGAAG AGCGACTCAT CGCGGCGTTT GACTTTCGGA AGAACCGGAG AACGTGGCTA 
GGTCAGATAC TTCGTGAAAT AGAAACATGC CAAAGTGTCA ATTTCAATTT GTTGTCGTGC 
AAACTCAGCG ACGAGGAAAT TATGGCGTTA GCGAAACATC TCGCTCAGTA CCGGCCTCGA 
GTTTCGACCG CGTATCTGGG TGGACACGGC GTAACAGTTC GAAGCATGAA AGTTTTGGCC 
AAGGACGTGC TTGCCAACAA CCACGTCAAT CTTCAACGGT TACACTTACA GCATACTCGT 
GTTGGGGATG AAGGGGCAGG AGCATTGGCG GAAGCACTGC TGTCTAACTC CAATTTGCGA 
ACTTTGACAT TATTCGATTG TAGTATAAGC CCAGAAGGAG CAAAGTTGTT GGCGCATACG 
TTGGCTCAGA ACAAGTCTTT GACACAACTA AATCTTCACA AGAATGCAAT CGGGAACCGA 
GGGGCACAGG AGCTTTTTAC GGCTTTAGTT GACCCACCGC ATCCCTCACT GGTTGTGTTG 
AATTTAGAAC AGAACGAAAT TAGCGACGGT GCACTCTTGC AGTTCCAATC GTTTGGCAGA 
CTGCAGCAGC TGAACATTGC TTCCAACAAT TTCACAGACC GTGCCGCCTT GGATTTGGCC 
AAGGCATGTT TCAACTCTTT GGCCAACGGC ACCCTTCAGC TAAGCTGGCT GACGGTGTCG 
AACAATTTTA TCTCAAAGAA AGGCTTGAAG GCCTTGGCAT TATTTCTTCC GGACGGGTTA 
GTCCTCGAAA ATGATGGCCA ATTAGAAGCG CAAACGGTAT TACCAATTAG AAGCGCAAAC 
GGTATTGACG CGTTGTACAA CAAAGCTTCT CTTAGCTAGC AATAAG 

 

Protein sequence

MAVDSSVASF DDTTRTDGSS FEADDVLAFL ENNLQNVRDL CVSKLWNDDR LADLDDFLRS 
HHAALHLQAL RLPNNGLTSR SSVNLANILS TTQTLRELDL SDNQVESQGL LALLPALTHE 
TCALRRLDLY NNKLGATGAT QIAAILRDNR SLRELRIGKN NLGRKKSLKV ISTALQRNAT 
LRTLDLSHNQ IDDGGAILLA PVLDPEVSQS RLRRLDLTYN KIWPEGVRNL TGALLEGNRT 
LRCLNLSMNH VGPEGAESLA VLLKFSFTLQ ELLLSRNALG DHGVKLLCQG LDESKLLSGT 
GLQRLDLDWN EIHDDGAKEL ATMLLDNAIL ESLNLASNAI GSDGAKALAN ALHSNQALTF 
LNLMGNQIRD PGAFSLAENL CRPSCRVETL LWEKNNCLTP LGEERLIAAF DFRKNRRTWL 
GQILREIETC QSVNFNLLSC KLSDEEIMAL AKHLAQYRPR VSTAYLGGHG VTVRSMKVLA 
KDVLANNHVN LQRLHLQHTR VGDEGAGALA EALLSNSNLR TLTLFDCSIS PEGAKLLAHT 
LAQNKSLTQL NLHKNAIGNR GAQELFTALV DPPHPSLVVL NLEQNEISDG ALLQFQSFGR 
LQQLNIASNN FTDRAALDLA KACFNSLANG TLQLSWLTVS NNFISKKGLK ALALFLPDGL 
VLENDGQLEA QTVLPIRSAN GIDALYNKAS LS