| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_32173 |
|---|
| Symbol | |
|---|
| ID | 7196238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 1878654 |
|---|
| End bp | 1880381 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177392 |
|---|
| Protein GI | 219111281 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.623051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGATT GTGGAGCTAC AGGGTCGGCT TTGGATCGAG TTGCACGATC GCTCTTGGGC
GGTTCCCAAG CTTCCGACGG CAATATTTCA AAGCAAGTGG CTTCGCTAAT GGGACACGCT
GCCGCAACGG GAAACATTGC GTTGTTGCAG ACGCCCATGT CACAGTCAGC ACCGCGACAA
CTAACAATGC CTCAAGCATC TGTGGCTACG ACATTCACGG TGAAACAGCC TGCGCAAGCT
TCGGCGCAGC AGCAACAACC GATAGCAATT GGGACTCCTT CGGAGCTGGT TTCTCAACAA
CCGTCATTCT ACGCCACTAC GCAATATTCA CAGCATCAAA ATGATGCTAT GATTCTTCAA
CATAATTTTC ATCAGCATCC AATTATGGCC ATGCAACAAC AGCAGCAGCA AGTTATGATG
CAAATGGCCC ATCAACAGCA ACAGATGGCA CATATGGTAA AACAGCAACA GCTTATGATT
CGTGCTCAAA ATCAGGTATC CGAACACCAT CATCATCGAA TAAGAGAGAG TAATGAACAA
AAATCAGTCT CCTTGGACAA TTGGCAAAAT GGCGTTGACA AAGAATTTGG GCAGCAAGTG
TCCGATATGG CTCCAGTAGG AATGCACGAG GGGGTGACAC AAGGCGTCTC GATGGAAGAA
TTGGCGGCGG CATGGGCCGA GGTTGCTGAC GACAACATTA CGGTAGGACA CGATGGACTT
GCACAAGGTG CTACAATAGA GGAACTGGCA GCTGCTTGGG CCCAAGCCGA GGCCGAATAC
GACTCCGTTG ATGCAGCTAC CAATCTTTGG AACGACACCA ATGATCCCGT ATACGAGTTT
CTCAACACGG AGAAACCGGA ACGCGTGGAT CAGCAGGACT GGATGGAGCA GGGATTGCGA
GAATTCAATG CAGGAAATCT GAAAGAAGCT GTGAAAGCAT TTGAAATTGA ATTGCAATAC
TGCAATGGAG ATAATTCAGC GGCGTGGAAA ATGCTGGGTC GCTGTCACGC CGAGAACGAT
ATGGATAGAG AAGCCATTGT GTGCTTGGAA CAAGCTGTGG ATCGCGATCC GTACTCTCCC
GAAGCGCTAC TATTGCTGGG AGTGAGCTAC GTCAACGAAC TTAATCATGC CAAAGCACTA
AAGAATCTGA AAGCCTGGAT TACGCACAAT CCCAAATTTG CAGGTATGGA GCTGCAGGTA
GATATGTACC GGGATTCATT GGTTGACCAA GAATCAGCAT TTGACGAAGT ACAACGACTG
TTGGTACAAG CACTAGAGTA CGATCCGGTT GATGCATCAG ACGTATTGGA AGCCATGGGA
GTTGTGTACA ACGTAAGTCG AGACTACGTA GCTGCTGGGG GTGCATTTCG CAGGGCCCTA
GACGCTCGAC CAGACGATTA TCAGTTATGG AACAAACTTG GCGCAACGTT GGCAAATGGA
AATCAAAGTC AAGAGGCTTT GCCGGCTTAC CATAAAGCAT TACAACTGAA ACCAAAGTAC
GCAAGAGCGT GGTTAAACAT GGCTATCTCC CATTCCAATC TTCAAAACTA CGATGAGGCA
GCTCGGTGTT ACCTTCAAAC GTTGAGCCTC AATCCTGCAG CGATTCATTG CTGGAGTTAT
CTCCGTATTG CGTTGTCCTG CTCGGAGCGC TGGGATTTGA TTCAGCATGC GGCATCCCAA
AATCTTGAGG CGTTCAAAGA TCTTTTTGAT TTCGTCATTT ATTCTTGA
|
|---|
| Protein sequence | MADCGATGSA LDRVARSLLG GSQASDGNIS KQVASLMGHA AATGNIALLQ TPMSQSAPRQ
LTMPQASVAT TFTVKQPAQA SAQQQQPIAI GTPSELVSQQ PSFYATTQYS QHQNDAMILQ
HNFHQHPIMA MQQQQQQVMM QMAHQQQQMA HMVKQQQLMI RAQNQVSEHH HHRIRESNEQ
KSVSLDNWQN GVDKEFGQQV SDMAPVGMHE GVTQGVSMEE LAAAWAEVAD DNITVGHDGL
AQGATIEELA AAWAQAEAEY DSVDAATNLW NDTNDPVYEF LNTEKPERVD QQDWMEQGLR
EFNAGNLKEA VKAFEIELQY CNGDNSAAWK MLGRCHAEND MDREAIVCLE QAVDRDPYSP
EALLLLGVSY VNELNHAKAL KNLKAWITHN PKFAGMELQV DMYRDSLVDQ ESAFDEVQRL
LVQALEYDPV DASDVLEAMG VVYNVSRDYV AAGGAFRRAL DARPDDYQLW NKLGATLANG
NQSQEALPAY HKALQLKPKY ARAWLNMAIS HSNLQNYDEA ARCYLQTLSL NPAAIHCWSY
LRIALSCSER WDLIQHAASQ NLEAFKDLFD FVIYS
|
|---|
| |