| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_31877 |
|---|
| Symbol | |
|---|
| ID | 7196412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 1155188 |
|---|
| End bp | 1156510 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177229 |
|---|
| Protein GI | 219110955 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00010716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG AACAATCAGG ACCTGGTGTC ATTATGAGCG GCATTCGCCG CATTGGTCAT
GGTCTCAAGA CTTCATTAGC CATAGTTGGT TTTGCAACAG CTTCCGGTCT TTACATGGAG
TACCGGAAGT ATTACCCTAT GGAAGAAGAC AACAATAAGA AGAAAGTTCT GGTGATTCCC
TTTCACCATT TACAGTTGAT TGAGAAAGAA AAAAAGAGCA TTAGATCCCA GCTATCGCGT
TTCGATGTGG ACACCAAAGA TTGCCCGGTG CAAATGGAAA TCAAGGATCT TGTGGATGTG
TTGCACCACG CGGCGTCAGA TCCCAGTATT GTCGCTTTGT ACGGCGTCTT TGGACACGGC
TCGACCTTGT CCCAAGCGGG TTGGGCGGAT TTGGAGGAAG TTCGGAACGC GTTACGAGTT
ATCCGCGAGT CGCATCGTTG GCATGCGGAG CCCAACCTTC AGCACAAGGC CCAGGTGATT
CCAGGAGTTG AGAATAAGCC CATGTACGCC TACGCGGATA CTTTTGCAAG TCTAGGGGAT
CCCGCTTACA AAGAGTATTA CTTGGCGTTG ATCTTTACAC ACATTCATAT GCAAAAGACC
GGGGAACTCA ACTTGTTTGG TGCCATGTTG CAGCAATTCT TTTTGCAGGG ACTACTGGAG
CAGTATGGTA TTGCATTACA CGTCTTCAAG CATGGATAGT ACAAGAATGC GACCAACATG
TTCACCAAAG CACGTTTGAA CAAGCCACAT TGTGAGAACG TCTCCAACAT TCTTGAACAG
ATCAACAACA ATGTATGCCA AGATATTACC AGATCTCATT CCAAGGCCTT GTTGACGTCT
TGGCTCAAGC AGGGTTGTCG GGATGACGTG GATTTGTGGA AGCGCATACA TCAATTGGGG
ACGTTTCCAG CTGTGACGGC ATACAAAGCA GGCCTCATAG ACTTCCTGCC CTGGCGCAAC
CAAAAGAACA CAAAAAGCAA GGTAAAGCCA CTTGATGGTA CAGGTAACAA AGAGTCTGCA
ATAGATGATA TTAAGAACAA ATGGGCATTG CAAGAAACTG ACTTTGAGCA ATTCAAAGCA
GACACGGCTG TCAGTCTCCA GGCCTACGCA AAACAAGTTG CAAAGAAGAA ACAAAATGAG
CAAGATATTT TCGACCAGTA TGGAACCCAA CATCCTGCCA TTCAAAGTAT TCTTGCCAAA
ATTGGCATGT CTTCTGTTGA TGATGGAGAA CCACATCCTC AGAAGGAAAC AATTGCATTG
CTAAGAGTCA ACAAAGGTAT TGGCAACTTG ACAGCCCGCA AGCTAGTCAA TTCGATTTGC
TGA
|
|---|
| Protein sequence | MSKEQSGPGV IMSGIRRIGH GLKTSLAIVG FATASGLYME YRKYYPMEED NNKKKVLVIP
FHHLQLIEKE KKSIRSQLSR FDVDTKDCPV QMEIKDLVDV LHHAASDPSI VALYGVFGHG
STLSQAGWAD LEEVRNALRV IRESHRWHAE PNLQHKAQVI PGVENKPMYA YADTFASLGD
PAYKEYYLAL IFTHIHMQKT GELNLFGAML QQFFLQGLLE QYGIALHINN NVCQDITRSH
SKALLTSWLK QGCRDDVDLW KRIHQLGTFP AVTAYKAGLI DFLPWRNQKN TKSKVKPLDG
TGNKESAIDD IKNKWALQET DFEQFKADTA VSLQAYAKQV AKKKQNEQDI FDQYGTQHPA
IQSILAKIGM SSVDDGEPHP QKETIALLRV NKGIGNLTAR KLVNSIC
|
|---|
| |