| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_17766 |
|---|
| Symbol | Lhcr4 |
|---|
| ID | 7196236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 1848846 |
|---|
| End bp | 1849845 |
|---|
| Gene Length | 1000 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | protein fucoxanthin chlorophyll a/c protein |
|---|
| Protein accession | XP_002177385 |
|---|
| Protein GI | 219111267 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCGACGCAAT TAGGCAAACA AAAATCACCA TGAAGACCGC TGTCCTCGCT TCTTTCCTCG
CTTCGGCTGC TGCCTTTGCT CCGGCCTCCA ACAATGGTAT GTGGAGTGTA GATCCCGCAA
CTGTAGATTA TGTATTGTTA GGGAATAGAT TCGAATTCGC GCAGTGTAAT GTTCCAATGG
AGTTCGTGTC CGGACACTTT TTCGTGCTGC CCGGGGATTG TCCCCCAAAA AAGGCTCGTC
TCACAGTCAG TGATTCGTTT TTGTAAAATA TGCAGGTCGT TCGGCTACCA TGCTTTTCGA
AGATGCTGCT GCCGCCGAAC CGGAAGCCAA GTATGTCGCC AGTGAGTCTC TTCCGTTCAT
GGAATACCCT CCCAACCTCA AAGGATACGT CGGTGACGCC GGATTCGATC CCTTCCGTTT
CTCTGATTTT CTCCCTATGG ATTTCCTCCG TGAGGCCGAG CTCAAGCACG GACGTATCTG
TATGATGGCC ACCGCTGGGT TCGCGGCAGT CGATCTAGGT CTTCGGGTTT ACCCGCTCCC
GGAAGGATAC GAAGGCCTCA CATCGGTCAC TGCTCACGAT GCGCTCGTCA AGCAGGGTGG
TATGGGTCAG ATGCTTCTCT GGTTTTCCTT CCTTGAGATC TTTGACACAG TGGCCGTCAT
TCAGATGCTC AACGGATCCG GCCGCCGACC TGGCGATTTT GGATTTGACC CCGCCGGGTT
CCTCAAGAAT GCCGATGCCA AGAAGGAAGA GGATATGATG CTGAAGGAAC TCACCAACGG
ACGTCTTGCT ATGTTGGCCT TTAGTGGTAT GGTCACACAG GCGGTGTTGA CCCAGGGTCC
TTTCCCCTAC GTCTAAGTCG TCGACGTAGT GACAGTGCGC GAGCGATTGG GATGCCACTC
AGCGCTCTCC ACAGTTCGGC TAACTGTAAG CTCTATTATG GAACAGTAAT ATTGCCACTC
TTATGCTGGT AGATGATGTT TAATTCGTCG TAAGGTAGTT
|
|---|
| Protein sequence | MKTAVLASFL ASAAAFAPAS NNGRSATMLF EDAAAAEPEA KYVASESLPF MEYPPNLKGY
VGDAGFDPFR FSDFLPMDFL REAELKHGRI CMMATAGFAA VDLGLRVYPL PEGYEGLTSV
TAHDALVKQG GMGQMLLWFS FLEIFDTVAV IQMLNGSGRR PGDFGFDPAG FLKNADAKKE
EDMMLKELTN GRLAMLAFSG MVTQAVLTQG PFPYV
|
|---|
| |