| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4425 |
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| Symbol | |
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| ID | 7094344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011668 |
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| Strand | - |
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| Start bp | 10733 |
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| End bp | 12856 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643467290 |
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| Product | type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_002364248 |
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| Protein GI | 217980272 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 65 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 0.664949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA
TTTCACAATT TGCGGATGTT CCTGCAGATT AACGCCGTGC TTATCCGCTG GACGTGTTAT
GGCGTGCTCA TCTTAACAGC GCTGCTATGC TATCTCTTCC TTGATAAAGA CACCTTAATG
GGCGCTTATT ATTATTGGAT AAACCAAACG GTTAGCGTGT TTAGACCAGA CAGTCATGTT
ATGCAAACGC AGTGGCAAGG CACAGTCTAT ACCAGTACGT TAGGGTCTCA ATTAGAAAAC
CCGACACTGA TTGCGGCCAA CAGCCGCTTT TGGTTGTGGA CACAAATTTA TCTCCTTATA
AGCTGTGTGA TTGGCATCGT TTTTCTGTCC GTGGCCATGT GGTATTTCAA GAAAAAAGGG
GACGAGCAAA CCGAGGAACA CTTTATTCGG GGCATGCAAA AAGCCACGCC GAAAGAATTA
GCAAAACAGC TTAAAAAAGA CAAGCGCCAA TCCGATTTCA AGCTCGATGG CATTGGTATT
TTCAAAGAAC GCTTTGAAGT ACAGCACTTG CTACTTGATG GCACCACGGG CGCGGGAAAG
TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGCAAG TTCTATAATC CGGCAACGGA CGTACTACTC
AACCCGTTTG ATGAACGCTG TGCTTACTGG GATGTGTGGT GTGATGCGCA TGAACCCTCG
GATTTTGAGA ACATGGCAAG CGCGCTCATT CCCCAACACG GCGAGGGCGA TCCATTTTGG
GTGCAATCTG CTCGCACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
AAGAACCAAA CCACAGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAGCT TGAGTCCTTA
AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CCGATAAAAT CCAAAAAACG
GCGATATCCA TTAAGTCGGT TCTCGCGGCT TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT TCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTTCTA TTTCTATCCA GTAACGCACA GCAACATGCA
TCATTGCGCC CCTTGATCTC AATGTGGCTA TCCATTGCAT CGACCGCCAT TTTAGAACAA
GACGAAGATC CCGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGTAAGT TCGGCGGTTG TTATGTCATA
GGCATTCAGT CATTCGCGCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC ACTTGAAATG
TTCGACTTGC TCAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTT GATGTCTCTA AAGAGCAATA CAGCTACGGT
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTTT GGCTACGCAC GCCTGGCAAT
TATCCCGTGG TAAGAGTGGA TTTAGTCTTT AACCAAATGC GCTCACTGTG CGCCCCGTTT
ATCAAACGTA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG TCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAAGCGGATA AAACCAAGCT CCAAAGCATT
CATGACACCA TGTATGAAGG TGATGAAAAC AATGATGAAC GCAGCGCGGA AGCGCAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG
GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCAGAGAAGA AAAAAGCCGC TGAAAAACAA
AAGGCCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCTGCA AATCGTGTCT
GTAGAAGACG CAGAAATTGG TTAA
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| Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFLDKDTLM
GAYYYWINQT VSVFRPDSHV MQTQWQGTVY TSTLGSQLEN PTLIAANSRF WLWTQIYLLI
SCVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDKRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
KNQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLVF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK
AKPTELALKD AEKKKAAEKQ KANDQHIEDA QRLEELQIVS VEDAEIG
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