| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3868 |
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| Symbol | rpoB |
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| ID | 7092564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | + |
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| Start bp | 4233995 |
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| End bp | 4238125 |
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| Gene Length | 4131 bp |
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| Protein Length | 1376 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643467153 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002364112 |
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| Protein GI | 217979965 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0444407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAT TTTCAGCGCA GACATTCAAC GGCCGTAAGC GTATCCGCAA ATTTTTTGGC
CACATCCGCG AAGTCGCGGA AATGCCCAAT CTGATTGAAG TTCAAAAAGC GTCCTATGAT
CAGTTCCTCC TCGTCGACGA GCCGCAGGGC GGCCGTCCCG ATGAAGGCCT GCAGTCCGTC
TTCAAGTCGG TGTTTCCGAT TTCGGATTTC TCGAACACCG CTCTGCTCGA ATTCGTGAAA
TATGAGTTCG AGCCGCCGAA ATATGACGTC GACGAGTGCC GCCAGCGAGG CATGACCTTT
GCCGCGCCGT TGAAGGTCAC GTTGCGCCTC ATCGTGTTCG ACGTCGATCC CGACACCGCT
GCGCGGTCCG TCAAGGACAT CAAGGAGCAG GACGTCTATA TGGGCGACAT GCCGCTCATG
ACGATGAACG GCACCTTCAT CGTCAACGGC ACCGAGCGCG TCATCGTCTC GCAGATGCAC
CGTTCGCCGG GCGTGTTCTT CGACCACGAC AAGGGCAAGA GCCATTCGTC GGGCAAGCTG
CTGTTCGCGG CGCGCATCAT CCCCTACCGC GGCTCCTGGC TCGACATCGA ATTCGACGCC
AAGGACATCG TCTATGCGCG TATCGACCGC CGGCGTAAGA TTCCGGCGAC GTCGGTGCTC
TATGCGCTCG GCATGGACGG CGAAGAGATT CTCTCGACCT TCTACAAGAC CATTCTGGTC
ACGCGCGACA AGGAAGGATG GCGCCAGCCG TTCGACGCCG AGCGGCTGAA GGGCCTCAAG
GCCGTCGTCG ACCTGCTCGA CGCGGAGACG GGCGAGGTCG TGCTCGAGGC CGGCAAGAAG
CTGACGGTGC GCACCGCGCG CCAGCTCGCC GAGCGCGGAT TGAAGTTCCT GCGCATGCAG
GACGAGGACC TTCACGGCCA GTATATCGCG ACCGATCTTT ATGATTCCGC GACCGGCGAA
ATCTTCGCCG AGGCTGGCGA AGAGATCACC GTCAAGACGC TGCCGCTTTT GATCGAGGCC
GGCTTCGACG AGCTGCCGCT CCTCGACATC GACCACATCA ACATCGGCCC CTACATCCGC
AACACGCTGC ACGTCGACAA GAACAAGGCG CGCGAAGAAG CTTTGTTCGA CATCTATCGC
GTCATGCGTC CCGGCGAGCC GCCGACGCTC GACTCGGCGG AGGCGATGTT CCATTCGCTG
TTCTTCGATT CCGAGCGCTA TGATCTTTCC GCGGTCGGAC GCGTCAAGAT GAACATGCGC
ATGGATCTCG ACGCGGCGGA CACCGTGCGC ACCTTGCGCA AGGAAGACAT CATCGCGGTG
ATGCGGGCGC TCGTCGATTT GCGCGACGGA CGCGGCGAGA TCGACGACAT CGACCATCTC
GGCAACCGGC GCGTGCGCTC GGTCGGCGAG CTGATGGAAA ACCAGTACCG TCTCGGCCTG
CTTAGGATGG AGCGCGCCAT CAAGGAGCGC ATGTCCTCCG TCGATATCGA CACGGTGATG
CCGCAGGACC TGATCAACGC CAAGCCGGCG GCGGCCTCGG TGCGTGAATT CTTCGGCTCC
TCGCAGTTGT CGCAGTTCAT GGATCAGACC AACCCGCTGT CCGAGATCAC GCATAAGCGC
CGCCTCTCCG CGCTTGGGCC GGGCGGCCTC ACGCGCGAAC GCGCCGGCTT CGAGGTGCGC
GACGTGCATC CGACGCATTA CGGCCGCATC TGCCCGATCG AGACGCCGGA AGGCCCGAAC
ATCGGCCTCA TCAATTCGCT CGCCACTTTC GCGCGCGTCA ACAAATACGG CTTCATCGAA
GCGCCCTATC GCCGCGTCAA GGAAAACCAC GTCAGCGATG AGGTCGTCTA TCTGTCGGCC
ATGGAAGAGA GCAAATATTA TGTCGCGCAG GCCAATGCGC CGCTCGACGC CGATAGCCGT
CTGACGGAAG ACCTCGTCGT CTGCCGCCAT GCGGGCGATG TCGTCATGGT GCCGCGCGAG
CGCGTCGATT TCATGGATGT GTCGCCAAAG CAGCTCGTCT CGGTCGCGGC GGCGTTGATT
CCGTTCCTTG AGAACGACGA CGCCAACCGC GCGTTGATGG GCTCGAACAT GCAGCGTCAG
GCCGTTCCGC TCGTGCGCGC CGATGCGCCG CTCGTCGGCA CCGGCATGGA GGCTGTGGTC
GCGCGCGATT CCGGCGCCGC CATCGCCGCG CGCCGCACCG GCTATATCGA CCAGATCGAC
GCCACCCGTA TCGTCGTGCG CGCAACGGAG GAATCCGATG CGAGCAAGCC CGGCGTCGAT
ATCTACCGGC TGATGAAGTT CCAGCGCTCG AACCAGTCGA CCTGCGTCAA CCAGAAGCCT
CTGGTCCGCG TCGGCGATTT CGTGCGCAAG GGCGACATCA TCGCTGATGG TCCCTCGACC
GATCTCGGCG ATCTCGCGCT CGGCCGCAAC GTCCTCGTCG CCTTCATGCC GTGGAATGGC
TACAATTTCG AAGATTCGAT CCTGCTCAAT GAGCGGATCG TCAAGGACGA CGTCTTCACC
TCGATTCACA TCGACGAATT CGAGGTGATG GCGCGCGACA CCAAGCTCGG CCCGGAAGAG
ATTACGCGCG ACATTCCGAA CGTCTCGGAA GAGGCGCTGA AGAATCTCGA CGAGGCCGGC
ATCGTCTACA TCGGCGCCGA AGTGCAGGCG GGCGATATTC TCGTCGGCAA GATCACGCCG
AAGGGCGAGA GCCCGATGAC GCCGGAAGAA AAGCTGCTGC GCGCGATCTT CGGCGAAAAG
GCCTCGGATG TGCGCGACAC GTCGCTGCGC GTGCCGCCGG GCGTGACCGG CACCATCGTC
GAGGTGCGCG TGTTCAACCG GCACGGCGTC GAAAAGGACG AGCGCGCCCA GGCGATCGAG
CGCGAAGAGA TCGAGCGGCT CGCCAAGGAC CGCGACGACG AGCTCGCGAT CCTCGACCGC
AACGTCTATG CGCGCTTGCT CGACGTGCTC GCCGGCAAGA AAGCCATCGC CGGTCCGAAG
GGCTTCAAGA AAGACACGGT GCTGACGCGG GAGATCATCG AGGAATATCC GCGTTCGCAA
TGGTGGATTT TCGCGATCGA GAACGACCAG ACGATGGCCG AGCTGGAGGC CATGCGCAAG
CAATACGATG AGTCGAAGAA AGGGCTCGAA AGCCGCTTCC TAGACAAGGT CGAAAAGCTG
CAGCGCGGCG ACGAGCTGTC GCCGGGCGTC ATGAAGATGG TCAAGGTCTT CGTCGCCGTG
AAGCGCAAGA TCCAGCCGGG CGACAAAATG GCCGGACGGC ACGGCAACAA GGGCGTCGTC
TCGAAGATCG TGCCGCAGGA GGATATGCCC TTCCTCGCCG ACGGGACTCC GGTCGATATC
GTGCTCAATC CGCTCGGCGT GCCGAGCCGC ATGAATGTCG GGCAGATTCT CGAGACGCAT
CTTGGCTGGG CTTGCGCCGG ACTTGGCCGG CAGGTGGCGG AAACGGTCAA CGCTTATATG
CGCAACCAGG ACTCCGGTCC GCTGCGTGAA AAGCTTGGCC AGATCTATGA CGCGAAGGCG
GAAATCGACG CGCTCGACGA CAATGTCGTC GTCGAGATCG GCGAGAATCT GCGCCGCGGC
GTGCCGATCG CAACGCCGGT GTTCGACGGC GCGCATGAGG CGGACATCGT CGTGATGCTC
GAACAGGCGG GTCTCGATCC GTCTGGCCAG TCGACCGTTT ATGACGGGCG CACCGGCGAG
GCCTTCGATC GTAAGGTGAC GGTCGGCTAC ATCTACATGT TGAAGCTGCA CCATCTCGTC
GACGACAAGA TCCATGCGCG TTCGATCGGT CCCTATAGCC TCGTCACCCA GCAGCCGCTT
GGCGGCAAGG CGCAGTTCGG CGGCCAGCGA TTCGGCGAAA TGGAGGTGTG GGCGCTCGAA
GCCTATGGCG CCGCCTACAC GCTGCAGGAA ATGCTGACCG TGAAGTCGGA CGACGTCGCA
GGCCGCACCA AGGTCTATGA ATCGATCGTG CGCGGCGACG ACGCCTTCGA GTCGGGCATC
CCCGAGAGCT TCAACGTGCT CGTCAAGGAG ATGCGCTCGC TCTGCCTCAA TGTCGAGCTG
ACCATGTCGA ACAAGGTCGC GCTGCCGCCG CAGGCCGAGG CAGCCGAATA A
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| Protein sequence | MAQFSAQTFN GRKRIRKFFG HIREVAEMPN LIEVQKASYD QFLLVDEPQG GRPDEGLQSV
FKSVFPISDF SNTALLEFVK YEFEPPKYDV DECRQRGMTF AAPLKVTLRL IVFDVDPDTA
ARSVKDIKEQ DVYMGDMPLM TMNGTFIVNG TERVIVSQMH RSPGVFFDHD KGKSHSSGKL
LFAARIIPYR GSWLDIEFDA KDIVYARIDR RRKIPATSVL YALGMDGEEI LSTFYKTILV
TRDKEGWRQP FDAERLKGLK AVVDLLDAET GEVVLEAGKK LTVRTARQLA ERGLKFLRMQ
DEDLHGQYIA TDLYDSATGE IFAEAGEEIT VKTLPLLIEA GFDELPLLDI DHINIGPYIR
NTLHVDKNKA REEALFDIYR VMRPGEPPTL DSAEAMFHSL FFDSERYDLS AVGRVKMNMR
MDLDAADTVR TLRKEDIIAV MRALVDLRDG RGEIDDIDHL GNRRVRSVGE LMENQYRLGL
LRMERAIKER MSSVDIDTVM PQDLINAKPA AASVREFFGS SQLSQFMDQT NPLSEITHKR
RLSALGPGGL TRERAGFEVR DVHPTHYGRI CPIETPEGPN IGLINSLATF ARVNKYGFIE
APYRRVKENH VSDEVVYLSA MEESKYYVAQ ANAPLDADSR LTEDLVVCRH AGDVVMVPRE
RVDFMDVSPK QLVSVAAALI PFLENDDANR ALMGSNMQRQ AVPLVRADAP LVGTGMEAVV
ARDSGAAIAA RRTGYIDQID ATRIVVRATE ESDASKPGVD IYRLMKFQRS NQSTCVNQKP
LVRVGDFVRK GDIIADGPST DLGDLALGRN VLVAFMPWNG YNFEDSILLN ERIVKDDVFT
SIHIDEFEVM ARDTKLGPEE ITRDIPNVSE EALKNLDEAG IVYIGAEVQA GDILVGKITP
KGESPMTPEE KLLRAIFGEK ASDVRDTSLR VPPGVTGTIV EVRVFNRHGV EKDERAQAIE
REEIERLAKD RDDELAILDR NVYARLLDVL AGKKAIAGPK GFKKDTVLTR EIIEEYPRSQ
WWIFAIENDQ TMAELEAMRK QYDESKKGLE SRFLDKVEKL QRGDELSPGV MKMVKVFVAV
KRKIQPGDKM AGRHGNKGVV SKIVPQEDMP FLADGTPVDI VLNPLGVPSR MNVGQILETH
LGWACAGLGR QVAETVNAYM RNQDSGPLRE KLGQIYDAKA EIDALDDNVV VEIGENLRRG
VPIATPVFDG AHEADIVVML EQAGLDPSGQ STVYDGRTGE AFDRKVTVGY IYMLKLHHLV
DDKIHARSIG PYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVA
GRTKVYESIV RGDDAFESGI PESFNVLVKE MRSLCLNVEL TMSNKVALPP QAEAAE
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